Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CLI entry

There are 5 chains in PDB entry 8CLI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 716
B	MET 50	PHE 822
C	HIS 290	GLN 890
D	A 2	T 36
E	A 39	T 73

There are 50 helices in PDB entry 8CLI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	20	30	Right-handed alpha
Helix 3	AA3	A	40	53	Right-handed alpha
Helix 4	AA4	A	123	128	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	154	164	Right-handed alpha
Helix 7	AA7	A	174	186	Right-handed alpha
Helix 8	AA8	A	193	200	Right-handed alpha
Helix 9	AA9	A	205	219	Right-handed alpha
Helix 10	AB1	A	246	248	Right-handed 310
Helix 11	AB2	A	253	269	Right-handed alpha
Helix 12	AB3	A	276	282	Right-handed alpha
Helix 13	AB4	A	286	300	Right-handed alpha
Helix 14	AB5	A	310	314	Right-handed alpha
Helix 15	AB6	A	367	380	Right-handed alpha
Helix 16	AB7	A	381	383	Right-handed 310
Helix 17	AB8	A	386	394	Right-handed alpha
Helix 18	AB9	A	396	410	Right-handed alpha
Helix 19	AC1	A	431	435	Right-handed alpha
Helix 20	AC2	A	437	456	Right-handed alpha
Helix 21	AC3	A	611	628	Right-handed alpha
Helix 22	AC4	A	633	649	Right-handed alpha
Helix 23	AC5	A	655	669	Right-handed alpha
Helix 24	AC6	A	700	715	Right-handed alpha
Helix 25	AC7	B	122	135	Right-handed alpha
Helix 26	AC8	B	138	148	Right-handed alpha
Helix 27	AC9	B	208	219	Right-handed alpha
Helix 28	AD1	B	235	245	Right-handed alpha
Helix 29	AD2	B	296	298	Right-handed 310
Helix 30	AD3	B	467	473	Right-handed alpha
Helix 31	AD4	B	517	527	Right-handed alpha
Helix 32	AD5	B	532	535	Right-handed 310
Helix 33	AD6	B	536	551	Right-handed alpha
Helix 34	AD7	B	554	568	Right-handed alpha
Helix 35	AD8	B	570	588	Right-handed alpha
Helix 36	AD9	B	664	696	Right-handed alpha
Helix 37	AE1	B	708	716	Right-handed alpha
Helix 38	AE2	B	724	738	Right-handed alpha
Helix 39	AE3	B	803	810	Right-handed alpha
Helix 40	AE4	C	300	322	Right-handed alpha
Helix 41	AE5	C	333	335	Right-handed 310
Helix 42	AE6	C	341	346	Right-handed alpha
Helix 43	AE7	C	515	523	Right-handed alpha
Helix 44	AE8	C	676	679	Right-handed 310
Helix 45	AE9	C	740	744	Right-handed 310
Helix 46	AF1	C	746	749	Right-handed 310
Helix 47	AF2	C	786	792	Right-handed alpha
Helix 48	AF3	C	808	811	Right-handed 310
Helix 49	AF4	C	812	822	Right-handed alpha
Helix 50	AF5	C	871	889	Right-handed alpha

There are 22 sheets in PDB entry 8CLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	57	61	anti-parallel
Strand 3	A	149	153	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	230	first strand
Strand 2	A	236	244	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	329	335	anti-parallel
Strand 3	A	303	309	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	423	430	anti-parallel
Strand 3	A	413	420	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	583	first strand
Strand 2	A	673	676	anti-parallel
Strand 3	A	690	692	anti-parallel
Strand 4	A	630	631	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	684	687	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	488	495	anti-parallel
Strand 4	B	475	482	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	103	110	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	191	195	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	257	first strand
Strand 2	B	273	280	anti-parallel
Strand 3	B	284	291	anti-parallel
Strand 4	B	300	307	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	323	first strand
Strand 2	B	326	335	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	360	363	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	381	first strand
Strand 2	B	386	395	anti-parallel
Strand 3	B	398	407	anti-parallel
Strand 4	B	410	418	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	431	first strand
Strand 2	B	438	441	anti-parallel
Strand 3	B	447	454	anti-parallel
Strand 4	B	459	466	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	763	first strand
Strand 2	B	769	771	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	787	first strand
Strand 2	B	794	795	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	532	535	anti-parallel
Strand 3	C	458	465	parallel
Strand 4	C	437	443	anti-parallel
Strand 5	C	414	419	anti-parallel
Strand 6	C	397	402	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	362	first strand
Strand 2	C	794	800	parallel
Strand 3	C	751	761	anti-parallel
Strand 4	C	728	733	anti-parallel
Strand 5	C	719	724	anti-parallel
Strand 6	C	708	713	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	389	392	anti-parallel
Strand 3	C	860	865	anti-parallel
Strand 4	C	851	856	anti-parallel
Strand 5	C	837	842	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	475	first strand
Strand 2	C	495	503	anti-parallel
Strand 3	C	508	514	anti-parallel
Strand 4	C	539	541	anti-parallel
Strand 5	C	601	603	parallel
Strand 6	C	593	595	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	562	first strand
Strand 2	C	570	575	anti-parallel
Strand 3	C	579	584	anti-parallel
Strand 4	C	607	610	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	621	first strand
Strand 2	C	628	632	anti-parallel
Strand 3	C	637	642	anti-parallel
Strand 4	C	651	654	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	670	674	anti-parallel
Strand 3	C	685	689	anti-parallel
Strand 4	C	699	703	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CLI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLI