Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CLJ entry

There are 10 chains in PDB entry 8CLJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 716
B	MET 50	PHE 822
C	HIS 290	GLN 890
D	A 1	T 35
E	A 1	T 35
F	MET 1	ASN 716
G	MET 50	PHE 822
H	HIS 290	GLN 890
I	A 1	T 35
J	A 1	T 35

There are 98 helices in PDB entry 8CLJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	14	Right-handed alpha
Helix 2	AA2	A	20	30	Right-handed alpha
Helix 3	AA3	A	40	53	Right-handed alpha
Helix 4	AA4	A	123	128	Right-handed alpha
Helix 5	AA5	A	137	146	Right-handed alpha
Helix 6	AA6	A	154	164	Right-handed alpha
Helix 7	AA7	A	174	186	Right-handed alpha
Helix 8	AA8	A	193	200	Right-handed alpha
Helix 9	AA9	A	205	219	Right-handed alpha
Helix 10	AB1	A	246	248	Right-handed 310
Helix 11	AB2	A	253	269	Right-handed alpha
Helix 12	AB3	A	276	282	Right-handed alpha
Helix 13	AB4	A	286	300	Right-handed alpha
Helix 14	AB5	A	310	314	Right-handed alpha
Helix 15	AB6	A	367	380	Right-handed alpha
Helix 16	AB7	A	381	383	Right-handed 310
Helix 17	AB8	A	386	394	Right-handed alpha
Helix 18	AB9	A	396	410	Right-handed alpha
Helix 19	AC1	A	437	456	Right-handed alpha
Helix 20	AC2	A	611	628	Right-handed alpha
Helix 21	AC3	A	633	649	Right-handed alpha
Helix 22	AC4	A	655	669	Right-handed alpha
Helix 23	AC5	A	700	715	Right-handed alpha
Helix 24	AC6	B	122	135	Right-handed alpha
Helix 25	AC7	B	138	148	Right-handed alpha
Helix 26	AC8	B	208	218	Right-handed alpha
Helix 27	AC9	B	235	245	Right-handed alpha
Helix 28	AD1	B	296	298	Right-handed 310
Helix 29	AD2	B	467	473	Right-handed alpha
Helix 30	AD3	B	517	527	Right-handed alpha
Helix 31	AD4	B	533	535	Right-handed 310
Helix 32	AD5	B	536	551	Right-handed alpha
Helix 33	AD6	B	554	568	Right-handed alpha
Helix 34	AD7	B	570	588	Right-handed alpha
Helix 35	AD8	B	664	696	Right-handed alpha
Helix 36	AD9	B	708	718	Right-handed alpha
Helix 37	AE1	B	724	738	Right-handed alpha
Helix 38	AE2	B	803	810	Right-handed alpha
Helix 39	AE3	C	300	322	Right-handed alpha
Helix 40	AE4	C	333	335	Right-handed 310
Helix 41	AE5	C	341	346	Right-handed alpha
Helix 42	AE6	C	515	523	Right-handed alpha
Helix 43	AE7	C	676	679	Right-handed 310
Helix 44	AE8	C	740	744	Right-handed 310
Helix 45	AE9	C	746	749	Right-handed 310
Helix 46	AF1	C	786	792	Right-handed alpha
Helix 47	AF2	C	808	811	Right-handed 310
Helix 48	AF3	C	812	822	Right-handed alpha
Helix 49	AF4	C	871	889	Right-handed alpha
Helix 50	AF5	F	2	13	Right-handed alpha
Helix 51	AF6	F	21	30	Right-handed alpha
Helix 52	AF7	F	40	53	Right-handed alpha
Helix 53	AF8	F	123	128	Right-handed alpha
Helix 54	AF9	F	137	146	Right-handed alpha
Helix 55	AG1	F	154	164	Right-handed alpha
Helix 56	AG2	F	174	187	Right-handed alpha
Helix 57	AG3	F	193	200	Right-handed alpha
Helix 58	AG4	F	205	219	Right-handed alpha
Helix 59	AG5	F	246	248	Right-handed 310
Helix 60	AG6	F	253	269	Right-handed alpha
Helix 61	AG7	F	276	282	Right-handed alpha
Helix 62	AG8	F	286	300	Right-handed alpha
Helix 63	AG9	F	310	314	Right-handed alpha
Helix 64	AH1	F	367	380	Right-handed alpha
Helix 65	AH2	F	381	383	Right-handed 310
Helix 66	AH3	F	386	394	Right-handed alpha
Helix 67	AH4	F	396	410	Right-handed alpha
Helix 68	AH5	F	437	457	Right-handed alpha
Helix 69	AH6	F	611	628	Right-handed alpha
Helix 70	AH7	F	633	649	Right-handed alpha
Helix 71	AH8	F	655	669	Right-handed alpha
Helix 72	AH9	F	700	715	Right-handed alpha
Helix 73	AI1	G	122	136	Right-handed alpha
Helix 74	AI2	G	138	148	Right-handed alpha
Helix 75	AI3	G	208	218	Right-handed alpha
Helix 76	AI4	G	235	245	Right-handed alpha
Helix 77	AI5	G	296	298	Right-handed 310
Helix 78	AI6	G	468	473	Right-handed alpha
Helix 79	AI7	G	517	527	Right-handed alpha
Helix 80	AI8	G	536	551	Right-handed alpha
Helix 81	AI9	G	554	568	Right-handed alpha
Helix 82	AJ1	G	570	588	Right-handed alpha
Helix 83	AJ2	G	664	698	Right-handed alpha
Helix 84	AJ3	G	701	707	Right-handed 310
Helix 85	AJ4	G	708	718	Right-handed alpha
Helix 86	AJ5	G	724	738	Right-handed alpha
Helix 87	AJ6	G	803	810	Right-handed alpha
Helix 88	AJ7	H	300	322	Right-handed alpha
Helix 89	AJ8	H	333	335	Right-handed 310
Helix 90	AJ9	H	341	346	Right-handed alpha
Helix 91	AK1	H	515	523	Right-handed alpha
Helix 92	AK2	H	676	679	Right-handed 310
Helix 93	AK3	H	740	744	Right-handed 310
Helix 94	AK4	H	746	749	Right-handed 310
Helix 95	AK5	H	786	792	Right-handed alpha
Helix 96	AK6	H	808	811	Right-handed 310
Helix 97	AK7	H	812	822	Right-handed alpha
Helix 98	AK8	H	871	889	Right-handed alpha

There are 45 sheets in PDB entry 8CLJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	122	first strand
Strand 2	A	57	61	anti-parallel
Strand 3	A	149	153	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	230	first strand
Strand 2	A	236	244	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	329	335	anti-parallel
Strand 3	A	303	309	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	385	first strand
Strand 2	A	423	430	anti-parallel
Strand 3	A	413	420	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	583	first strand
Strand 2	A	673	676	anti-parallel
Strand 3	A	690	692	anti-parallel
Strand 4	A	630	631	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	684	687	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	59	first strand
Strand 2	B	509	514	anti-parallel
Strand 3	B	488	495	anti-parallel
Strand 4	B	475	482	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	77	82	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	103	110	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	182	186	anti-parallel
Strand 3	B	191	195	anti-parallel
Strand 4	B	203	207	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	257	first strand
Strand 2	B	273	280	anti-parallel
Strand 3	B	284	291	anti-parallel
Strand 4	B	300	307	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	323	first strand
Strand 2	B	326	335	anti-parallel
Strand 3	B	340	343	anti-parallel
Strand 4	B	360	363	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	381	first strand
Strand 2	B	386	395	anti-parallel
Strand 3	B	398	407	anti-parallel
Strand 4	B	410	418	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	431	first strand
Strand 2	B	438	441	anti-parallel
Strand 3	B	447	454	anti-parallel
Strand 4	B	459	466	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	761	763	first strand
Strand 2	B	769	771	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	787	first strand
Strand 2	B	794	795	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	339	first strand
Strand 2	C	532	535	anti-parallel
Strand 3	C	458	465	parallel
Strand 4	C	437	443	anti-parallel
Strand 5	C	414	419	anti-parallel
Strand 6	C	397	402	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	362	first strand
Strand 2	C	794	800	parallel
Strand 3	C	751	761	anti-parallel
Strand 4	C	728	733	anti-parallel
Strand 5	C	719	724	anti-parallel
Strand 6	C	708	713	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	389	392	anti-parallel
Strand 3	C	860	865	anti-parallel
Strand 4	C	851	856	anti-parallel
Strand 5	C	837	842	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	470	475	first strand
Strand 2	C	495	503	anti-parallel
Strand 3	C	508	514	anti-parallel
Strand 4	C	539	541	anti-parallel
Strand 5	C	601	603	parallel
Strand 6	C	593	595	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	557	562	first strand
Strand 2	C	570	575	anti-parallel
Strand 3	C	579	584	anti-parallel
Strand 4	C	607	610	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	621	first strand
Strand 2	C	628	633	anti-parallel
Strand 3	C	637	642	anti-parallel
Strand 4	C	651	654	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	670	674	anti-parallel
Strand 3	C	685	689	anti-parallel
Strand 4	C	699	703	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	20	first strand
Strand 2	F	149	153	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	121	122	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	76	first strand
Strand 2	F	87	88	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	103	first strand
Strand 2	F	112	113	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	230	first strand
Strand 2	F	236	244	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	275	first strand
Strand 2	F	329	335	anti-parallel
Strand 3	F	303	309	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	384	385	first strand
Strand 2	F	423	430	anti-parallel
Strand 3	F	413	420	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	580	583	first strand
Strand 2	F	673	681	anti-parallel
Strand 3	F	684	692	anti-parallel
Strand 4	F	630	631	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	59	first strand
Strand 2	G	508	514	anti-parallel
Strand 3	G	488	495	anti-parallel
Strand 4	G	475	482	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	72	first strand
Strand 2	G	77	81	anti-parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	103	110	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	164	169	first strand
Strand 2	G	182	186	anti-parallel
Strand 3	G	191	195	anti-parallel
Strand 4	G	203	207	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	248	257	first strand
Strand 2	G	273	280	anti-parallel
Strand 3	G	284	291	anti-parallel
Strand 4	G	300	307	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	313	323	first strand
Strand 2	G	326	335	anti-parallel
Strand 3	G	340	343	anti-parallel
Strand 4	G	360	363	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	371	381	first strand
Strand 2	G	386	395	anti-parallel
Strand 3	G	398	407	anti-parallel
Strand 4	G	410	418	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	428	431	first strand
Strand 2	G	438	442	anti-parallel
Strand 3	G	446	454	anti-parallel
Strand 4	G	459	466	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	761	764	first strand
Strand 2	G	768	771	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	786	787	first strand
Strand 2	G	794	795	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	337	339	first strand
Strand 2	H	532	535	anti-parallel
Strand 3	H	458	465	parallel
Strand 4	H	437	445	anti-parallel
Strand 5	H	413	419	anti-parallel
Strand 6	H	397	402	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	358	362	first strand
Strand 2	H	794	800	parallel
Strand 3	H	751	761	anti-parallel
Strand 4	H	728	733	anti-parallel
Strand 5	H	719	724	anti-parallel
Strand 6	H	708	714	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	378	379	first strand
Strand 2	H	389	392	anti-parallel
Strand 3	H	860	865	anti-parallel
Strand 4	H	851	856	anti-parallel
Strand 5	H	837	842	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	470	475	first strand
Strand 2	H	495	503	anti-parallel
Strand 3	H	508	514	anti-parallel
Strand 4	H	539	541	anti-parallel
Strand 5	H	601	603	parallel
Strand 6	H	593	595	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	557	562	first strand
Strand 2	H	570	575	anti-parallel
Strand 3	H	579	584	anti-parallel
Strand 4	H	607	610	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	618	621	first strand
Strand 2	H	628	632	anti-parallel
Strand 3	H	637	642	anti-parallel
Strand 4	H	651	654	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	657	662	first strand
Strand 2	H	670	675	anti-parallel
Strand 3	H	685	689	anti-parallel
Strand 4	H	699	703	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CLJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLJ