Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CLO entry

There are 2 chains in PDB entry 8CLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 308
B
 MET 1ALA 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8CLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 53Right-handed 310
Helix 2
AA2
A
54 62Right-handed alpha
Helix 3
AA3
A
86 101Right-handed alpha
Helix 4
AA4
A
112 125Right-handed alpha
Helix 5
AA5
A
152 156Right-handed 310
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
A
169 173Right-handed 310
Helix 8
AA8
A
176 186Right-handed alpha
Helix 9
AA9
A
189 195Right-handed alpha
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
209 217Right-handed alpha
Helix 12
AB3
A
225 231Right-handed alpha
Helix 13
AB4
A
258 272Right-handed alpha
Helix 14
AB5
A
287 292Right-handed alpha
Helix 15
AB6
A
292 305Right-handed alpha
Helix 16
AB7
B
4 8Right-handed 310
Helix 17
AB8
B
50 53Right-handed 310
Helix 18
AB9
B
54 62Right-handed alpha
Helix 19
AC1
B
86 101Right-handed alpha
Helix 20
AC2
B
112 125Right-handed alpha
Helix 21
AC3
B
152 156Right-handed 310
Helix 22
AC4
B
157 168Right-handed alpha
Helix 23
AC5
B
169 173Right-handed 310
Helix 24
AC6
B
176 186Right-handed alpha
Helix 25
AC7
B
189 195Right-handed alpha
Helix 26
AC8
B
201 206Right-handed alpha
Helix 27
AC9
B
209 217Right-handed alpha
Helix 28
AD1
B
225 231Right-handed alpha
Helix 29
AD2
B
258 273Right-handed alpha
Helix 30
AD3
B
287 292Right-handed alpha
Helix 31
AD4
B
292 306Right-handed alpha
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There are 4 sheets in PDB entry 8CLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
A
27 33anti-parallel
Strand 3
A
66 70anti-parallel
Strand 4
A
40 44parallel
Strand 5
A
106 111parallel
Strand 6
A
130 136parallel
Strand 7
A
237 241parallel
Strand 8
A
276 280parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
253 255anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 22first strand
Strand 2
B
27 33anti-parallel
Strand 3
B
66 70anti-parallel
Strand 4
B
40 44parallel
Strand 5
B
106 111parallel
Strand 6
B
130 136parallel
Strand 7
B
237 241parallel
Strand 8
B
276 280parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 246first strand
Strand 2
B
253 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il