Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CLP entry

There are 4 chains in PDB entry 8CLP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	ALA 305
B	VAL 12	ALA 308
C	VAL 10	LEU 307
D	THR 3	LEU 307

There are 58 helices in PDB entry 8CLP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	53	Right-handed 310
Helix 2	AA2	A	54	62	Right-handed alpha
Helix 3	AA3	A	86	101	Right-handed alpha
Helix 4	AA4	A	112	125	Right-handed alpha
Helix 5	AA5	A	152	156	Right-handed 310
Helix 6	AA6	A	157	168	Right-handed alpha
Helix 7	AA7	A	169	173	Right-handed 310
Helix 8	AA8	A	176	185	Right-handed alpha
Helix 9	AA9	A	201	206	Right-handed alpha
Helix 10	AB1	A	209	217	Right-handed alpha
Helix 11	AB2	A	225	231	Right-handed alpha
Helix 12	AB3	A	258	272	Right-handed alpha
Helix 13	AB4	A	287	292	Right-handed alpha
Helix 14	AB5	A	292	305	Right-handed alpha
Helix 15	AB6	B	50	53	Right-handed 310
Helix 16	AB7	B	54	62	Right-handed alpha
Helix 17	AB8	B	86	101	Right-handed alpha
Helix 18	AB9	B	112	125	Right-handed alpha
Helix 19	AC1	B	152	156	Right-handed 310
Helix 20	AC2	B	157	168	Right-handed alpha
Helix 21	AC3	B	169	173	Right-handed 310
Helix 22	AC4	B	176	186	Right-handed alpha
Helix 23	AC5	B	189	194	Right-handed alpha
Helix 24	AC6	B	201	206	Right-handed alpha
Helix 25	AC7	B	209	217	Right-handed alpha
Helix 26	AC8	B	225	231	Right-handed alpha
Helix 27	AC9	B	258	272	Right-handed alpha
Helix 28	AD1	B	287	292	Right-handed alpha
Helix 29	AD2	B	292	305	Right-handed alpha
Helix 30	AD3	C	50	53	Right-handed 310
Helix 31	AD4	C	54	62	Right-handed alpha
Helix 32	AD5	C	86	101	Right-handed alpha
Helix 33	AD6	C	112	125	Right-handed alpha
Helix 34	AD7	C	152	156	Right-handed 310
Helix 35	AD8	C	157	168	Right-handed alpha
Helix 36	AD9	C	169	173	Right-handed 310
Helix 37	AE1	C	176	184	Right-handed alpha
Helix 38	AE2	C	201	206	Right-handed alpha
Helix 39	AE3	C	209	217	Right-handed alpha
Helix 40	AE4	C	225	231	Right-handed alpha
Helix 41	AE5	C	258	273	Right-handed alpha
Helix 42	AE6	C	287	292	Right-handed alpha
Helix 43	AE7	C	292	306	Right-handed alpha
Helix 44	AE8	D	4	8	Right-handed 310
Helix 45	AE9	D	50	53	Right-handed 310
Helix 46	AF1	D	54	62	Right-handed alpha
Helix 47	AF2	D	86	101	Right-handed alpha
Helix 48	AF3	D	112	125	Right-handed alpha
Helix 49	AF4	D	152	156	Right-handed 310
Helix 50	AF5	D	157	168	Right-handed alpha
Helix 51	AF6	D	169	173	Right-handed 310
Helix 52	AF7	D	176	184	Right-handed alpha
Helix 53	AF8	D	201	206	Right-handed alpha
Helix 54	AF9	D	209	217	Right-handed alpha
Helix 55	AG1	D	225	231	Right-handed alpha
Helix 56	AG2	D	258	273	Right-handed alpha
Helix 57	AG3	D	287	292	Right-handed alpha
Helix 58	AG4	D	292	306	Right-handed alpha

There are 8 sheets in PDB entry 8CLP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	22	first strand
Strand 2	A	27	33	anti-parallel
Strand 3	A	66	70	anti-parallel
Strand 4	A	40	44	parallel
Strand 5	A	106	111	parallel
Strand 6	A	130	136	parallel
Strand 7	A	237	241	parallel
Strand 8	A	276	280	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	253	255	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	27	33	anti-parallel
Strand 3	B	66	70	anti-parallel
Strand 4	B	40	44	parallel
Strand 5	B	106	111	parallel
Strand 6	B	130	136	parallel
Strand 7	B	237	241	parallel
Strand 8	B	276	280	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	246	first strand
Strand 2	B	253	255	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	22	first strand
Strand 2	C	27	33	anti-parallel
Strand 3	C	66	70	anti-parallel
Strand 4	C	40	44	parallel
Strand 5	C	106	111	parallel
Strand 6	C	130	136	parallel
Strand 7	C	237	241	parallel
Strand 8	C	276	280	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	253	255	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	22	first strand
Strand 2	D	27	33	anti-parallel
Strand 3	D	66	70	anti-parallel
Strand 4	D	40	44	parallel
Strand 5	D	106	111	parallel
Strand 6	D	130	136	parallel
Strand 7	D	237	241	parallel
Strand 8	D	276	280	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	253	255	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CLP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLP