Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CLS entry

There are 8 chains in PDB entry 8CLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 328	LYS 1310
B	ASN 335	LYS 1310
C	ASP 1	ASP 24
D	ASN 1	ALA 27
E	ASP 1	ASP 24
F	ASN 1	SER 24
G	ASP 1	SER 25
H	SER 2	ALA 27

There are 42 helices in PDB entry 8CLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	347	355	Right-handed 310
Helix 2	AA2	A	399	403	Right-handed 310
Helix 3	AA3	A	460	465	Right-handed alpha
Helix 4	AA4	A	514	518	Right-handed 310
Helix 5	AA5	A	532	536	Right-handed 310
Helix 6	AA6	A	593	598	Right-handed alpha
Helix 7	AA7	A	639	642	Right-handed 310
Helix 8	AA8	A	654	659	Right-handed alpha
Helix 9	AA9	A	660	662	Right-handed 310
Helix 10	AB1	A	684	694	Right-handed alpha
Helix 11	AB2	A	713	717	Right-handed 310
Helix 12	AB3	A	770	775	Right-handed alpha
Helix 13	AB4	A	776	781	Right-handed 310
Helix 14	AB5	A	1033	1044	Right-handed alpha
Helix 15	AB6	A	1120	1124	Right-handed 310
Helix 16	AB7	A	1173	1184	Right-handed alpha
Helix 17	AB8	A	1261	1266	Right-handed alpha
Helix 18	AB9	B	347	355	Right-handed 310
Helix 19	AC1	B	399	404	Right-handed alpha
Helix 20	AC2	B	460	465	Right-handed alpha
Helix 21	AC3	B	466	470	Right-handed 310
Helix 22	AC4	B	594	600	Right-handed alpha
Helix 23	AC5	B	654	659	Right-handed alpha
Helix 24	AC6	B	660	662	Right-handed 310
Helix 25	AC7	B	683	694	Right-handed alpha
Helix 26	AC8	B	728	733	Right-handed alpha
Helix 27	AC9	B	770	775	Right-handed alpha
Helix 28	AD1	B	776	781	Right-handed 310
Helix 29	AD2	B	1024	1044	Right-handed alpha
Helix 30	AD3	B	1120	1124	Right-handed 310
Helix 31	AD4	B	1173	1179	Right-handed alpha
Helix 32	AD5	B	1261	1268	Right-handed alpha
Helix 33	AD6	C	4	9	Right-handed alpha
Helix 34	AD7	C	15	21	Right-handed alpha
Helix 35	AD8	D	6	18	Right-handed alpha
Helix 36	AD9	E	2	8	Right-handed alpha
Helix 37	AE1	E	15	21	Right-handed alpha
Helix 38	AE2	F	6	18	Right-handed alpha
Helix 39	AE3	G	4	9	Right-handed alpha
Helix 40	AE4	G	15	20	Right-handed alpha
Helix 41	AE5	G	21	23	Right-handed 310
Helix 42	AE6	H	7	17	Right-handed alpha

There are 39 sheets in PDB entry 8CLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	359	360	parallel
Strand 3	A	384	385	parallel
Strand 4	A	409	410	parallel
Strand 5	A	439	440	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	364	367	parallel
Strand 3	A	389	392	parallel
Strand 4	A	421	424	parallel
Strand 5	A	445	448	parallel
Strand 6	A	473	476	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	522	first strand
Strand 2	A	526	527	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	556	first strand
Strand 2	A	562	567	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	572	first strand
Strand 2	A	575	577	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	587	first strand
Strand 2	A	590	592	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	604	first strand
Strand 2	A	607	610	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	614	first strand
Strand 2	A	617	619	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	628	first strand
Strand 2	A	635	637	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	666	668	parallel
Strand 3	A	698	699	parallel
Strand 4	A	722	723	parallel
Strand 5	A	755	756	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	675	first strand
Strand 2	A	703	706	parallel
Strand 3	A	734	739	parallel
Strand 4	A	760	764	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	806	808	first strand
Strand 2	A	914	916	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	812	816	first strand
Strand 2	A	821	824	anti-parallel
Strand 3	A	887	890	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	830	831	first strand
Strand 2	A	843	844	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	878	879	first strand
Strand 2	A	850	859	anti-parallel
Strand 3	A	898	907	anti-parallel
Strand 4	A	920	923	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	933	941	first strand
Strand 2	A	944	950	anti-parallel
Strand 3	A	1150	1153	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1127	1130	first strand
Strand 2	A	1137	1144	anti-parallel
Strand 3	A	959	968	anti-parallel
Strand 4	A	1161	1170	anti-parallel
Strand 5	A	1196	1197	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1208	1214	first strand
Strand 2	A	1222	1229	anti-parallel
Strand 3	A	1270	1274	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1260	first strand
Strand 2	A	1238	1247	anti-parallel
Strand 3	A	1277	1287	anti-parallel
Strand 4	A	1290	1291	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1255	1260	first strand
Strand 2	A	1238	1247	anti-parallel
Strand 3	A	1277	1287	anti-parallel
Strand 4	A	1298	1302	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	339	first strand
Strand 2	B	359	360	parallel
Strand 3	B	384	385	parallel
Strand 4	B	409	410	parallel
Strand 5	B	439	440	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	344	first strand
Strand 2	B	364	367	parallel
Strand 3	B	389	392	parallel
Strand 4	B	419	424	parallel
Strand 5	B	444	448	parallel
Strand 6	B	473	474	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	556	first strand
Strand 2	B	562	567	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	570	572	first strand
Strand 2	B	575	577	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	587	first strand
Strand 2	B	590	593	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	604	first strand
Strand 2	B	607	610	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	614	first strand
Strand 2	B	617	619	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	628	first strand
Strand 2	B	635	637	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	666	668	parallel
Strand 3	B	698	699	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	652	first strand
Strand 2	B	673	675	parallel
Strand 3	B	703	706	parallel
Strand 4	B	734	739	parallel
Strand 5	B	760	764	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	723	first strand
Strand 2	B	755	756	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	816	first strand
Strand 2	B	820	825	anti-parallel
Strand 3	B	887	891	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	830	831	first strand
Strand 2	B	843	844	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	878	879	first strand
Strand 2	B	850	859	anti-parallel
Strand 3	B	898	907	anti-parallel
Strand 4	B	920	923	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	933	939	first strand
Strand 2	B	945	950	anti-parallel
Strand 3	B	1150	1152	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1127	1130	first strand
Strand 2	B	1137	1144	anti-parallel
Strand 3	B	959	968	anti-parallel
Strand 4	B	1162	1170	anti-parallel
Strand 5	B	1194	1196	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1208	1214	first strand
Strand 2	B	1222	1229	anti-parallel
Strand 3	B	1270	1274	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1255	1260	first strand
Strand 2	B	1238	1247	anti-parallel
Strand 3	B	1277	1287	anti-parallel
Strand 4	B	1290	1291	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1255	1260	first strand
Strand 2	B	1238	1247	anti-parallel
Strand 3	B	1277	1287	anti-parallel
Strand 4	B	1298	1302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLS