Analysis of interatomic Contacts of Structural Units in PDB entry:
8CLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CLT entry

There are 2 chains in PDB entry 8CLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 26HIS 332
B
 SER 23ALA 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 8CLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 69Right-handed 310
Helix 2
AA2
A
70 79Right-handed alpha
Helix 3
AA3
A
102 117Right-handed alpha
Helix 4
AA4
A
128 141Right-handed alpha
Helix 5
AA5
A
168 172Right-handed 310
Helix 6
AA6
A
173 184Right-handed alpha
Helix 7
AA7
A
185 189Right-handed 310
Helix 8
AA8
A
192 203Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
218 223Right-handed alpha
Helix 11
AB2
A
226 234Right-handed alpha
Helix 12
AB3
A
242 249Right-handed alpha
Helix 13
AB4
A
275 289Right-handed alpha
Helix 14
AB5
A
304 309Right-handed alpha
Helix 15
AB6
A
309 322Right-handed alpha
Helix 16
AB7
A
327 331Right-handed 310
Helix 17
AB8
B
66 69Right-handed 310
Helix 18
AB9
B
70 78Right-handed alpha
Helix 19
AC1
B
102 117Right-handed alpha
Helix 20
AC2
B
128 141Right-handed alpha
Helix 21
AC3
B
168 172Right-handed 310
Helix 22
AC4
B
173 184Right-handed alpha
Helix 23
AC5
B
185 189Right-handed 310
Helix 24
AC6
B
192 203Right-handed alpha
Helix 25
AC7
B
205 209Right-handed 310
Helix 26
AC8
B
218 223Right-handed alpha
Helix 27
AC9
B
226 234Right-handed alpha
Helix 28
AD1
B
242 249Right-handed alpha
Helix 29
AD2
B
275 289Right-handed alpha
Helix 30
AD3
B
304 309Right-handed alpha
Helix 31
AD4
B
309 322Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8CLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
43 49anti-parallel
Strand 3
A
82 86anti-parallel
Strand 4
A
56 60parallel
Strand 5
A
122 127parallel
Strand 6
A
146 152parallel
Strand 7
A
254 258parallel
Strand 8
A
293 297parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
270 272anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
43 49anti-parallel
Strand 3
B
82 86anti-parallel
Strand 4
B
56 60parallel
Strand 5
B
122 127parallel
Strand 6
B
146 152parallel
Strand 7
B
254 258parallel
Strand 8
B
293 297parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
270 272anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il