Analysis of interatomic Contacts of Structural Units in PDB entry:
8CM0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CM0 entry

There are 2 chains in PDB entry 8CM0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PHE 4ILE 162
A
 CYS 1292LEU 1430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8CM0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
5 15Right-handed alpha
Helix 2
AA2
B
37 43Right-handed alpha
Helix 3
AA3
B
52 57Right-handed 310
Helix 4
AA4
B
78 95Right-handed alpha
Helix 5
AA5
B
101 103Right-handed 310
Helix 6
AA6
B
111 133Right-handed alpha
Helix 7
AA7
B
136 147Right-handed alpha
Helix 8
AA8
A
1293 1305Right-handed alpha
Helix 9
AA9
A
1313 1324Right-handed alpha
Helix 10
AB1
A
1331 1358Right-handed alpha
Helix 11
AB2
A
1380 1382Right-handed 310
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There are 3 sheets in PDB entry 8CM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 34first strand
Strand 2
B
158 161parallel
Strand 3
B
151 155anti-parallel
Strand 4
B
58 59anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
109 110anti-parallel
Strand 3
A
1425 1427anti-parallel
Strand 4
A
1326 1328anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1366 1369first strand
Strand 2
A
1384 1387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il