Analysis of interatomic Contacts of Structural Units in PDB entry:
8CM9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CM9 entry

There are 8 chains in PDB entry 8CM9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 322	LYS 1038
B	MET 322	LYS 1038
C	MET 322	LYS 1038
D	MET 322	LYS 1038
E	PHE 7	ILE 13
F	PHE 7	ILE 13
G	PHE 7	ILE 13
H	PHE 7	ILE 13

There are157 helices in PDB entry 8CM9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	323	341	Right-handed alpha
Helix 2	AA2	A	342	357	Right-handed alpha
Helix 3	AA3	A	360	374	Right-handed alpha
Helix 4	AA4	A	376	391	Right-handed alpha
Helix 5	AA5	A	394	408	Right-handed alpha
Helix 6	AA6	A	410	425	Right-handed alpha
Helix 7	AA7	A	428	442	Right-handed alpha
Helix 8	AA8	A	444	459	Right-handed alpha
Helix 9	AA9	A	462	476	Right-handed alpha
Helix 10	AB1	A	481	499	Right-handed alpha
Helix 11	AB2	A	506	511	Right-handed alpha
Helix 12	AB3	A	516	537	Right-handed alpha
Helix 13	AB4	A	568	575	Right-handed alpha
Helix 14	AB5	A	576	581	Right-handed alpha
Helix 15	AB6	A	599	609	Right-handed alpha
Helix 16	AB7	A	616	618	Right-handed 310
Helix 17	AB8	A	620	632	Right-handed alpha
Helix 18	AB9	A	648	653	Right-handed alpha
Helix 19	AC1	A	685	692	Right-handed 310
Helix 20	AC2	A	707	712	Right-handed alpha
Helix 21	AC3	A	713	716	Right-handed 310
Helix 22	AC4	A	740	747	Right-handed alpha
Helix 23	AC5	A	780	793	Right-handed alpha
Helix 24	AC6	A	809	814	Right-handed alpha
Helix 25	AC7	A	814	819	Right-handed alpha
Helix 26	AC8	A	833	835	Right-handed 310
Helix 27	AC9	A	849	853	Right-handed 310
Helix 28	AD1	A	854	868	Right-handed alpha
Helix 29	AD2	A	881	893	Right-handed alpha
Helix 30	AD3	A	896	898	Right-handed 310
Helix 31	AD4	A	907	914	Right-handed alpha
Helix 32	AD5	A	915	918	Right-handed 310
Helix 33	AD6	A	930	939	Right-handed alpha
Helix 34	AD7	A	950	953	Right-handed 310
Helix 35	AD8	A	954	964	Right-handed alpha
Helix 36	AD9	A	965	969	Right-handed 310
Helix 37	AE1	A	972	986	Right-handed alpha
Helix 38	AE2	A	986	1004	Right-handed alpha
Helix 39	AE3	A	1008	1029	Right-handed alpha
Helix 40	AE4	B	323	341	Right-handed alpha
Helix 41	AE5	B	342	357	Right-handed alpha
Helix 42	AE6	B	360	374	Right-handed alpha
Helix 43	AE7	B	376	391	Right-handed alpha
Helix 44	AE8	B	394	408	Right-handed alpha
Helix 45	AE9	B	410	425	Right-handed alpha
Helix 46	AF1	B	428	442	Right-handed alpha
Helix 47	AF2	B	444	459	Right-handed alpha
Helix 48	AF3	B	462	477	Right-handed alpha
Helix 49	AF4	B	481	499	Right-handed alpha
Helix 50	AF5	B	506	511	Right-handed alpha
Helix 51	AF6	B	516	537	Right-handed alpha
Helix 52	AF7	B	568	575	Right-handed alpha
Helix 53	AF8	B	576	581	Right-handed alpha
Helix 54	AF9	B	599	609	Right-handed alpha
Helix 55	AG1	B	616	618	Right-handed 310
Helix 56	AG2	B	620	632	Right-handed alpha
Helix 57	AG3	B	648	653	Right-handed alpha
Helix 58	AG4	B	685	692	Right-handed 310
Helix 59	AG5	B	707	712	Right-handed alpha
Helix 60	AG6	B	713	716	Right-handed 310
Helix 61	AG7	B	740	747	Right-handed alpha
Helix 62	AG8	B	780	793	Right-handed alpha
Helix 63	AG9	B	809	819	Right-handed alpha
Helix 64	AH1	B	833	836	Right-handed 310
Helix 65	AH2	B	849	853	Right-handed 310
Helix 66	AH3	B	854	868	Right-handed alpha
Helix 67	AH4	B	881	893	Right-handed alpha
Helix 68	AH5	B	896	898	Right-handed 310
Helix 69	AH6	B	907	914	Right-handed alpha
Helix 70	AH7	B	915	918	Right-handed 310
Helix 71	AH8	B	930	939	Right-handed alpha
Helix 72	AH9	B	950	953	Right-handed 310
Helix 73	AI1	B	954	964	Right-handed alpha
Helix 74	AI2	B	965	969	Right-handed 310
Helix 75	AI3	B	972	986	Right-handed alpha
Helix 76	AI4	B	986	1004	Right-handed alpha
Helix 77	AI5	B	1008	1029	Right-handed alpha
Helix 78	AI6	C	323	341	Right-handed alpha
Helix 79	AI7	C	342	357	Right-handed alpha
Helix 80	AI8	C	360	374	Right-handed alpha
Helix 81	AI9	C	376	391	Right-handed alpha
Helix 82	AJ1	C	394	408	Right-handed alpha
Helix 83	AJ2	C	410	425	Right-handed alpha
Helix 84	AJ3	C	428	442	Right-handed alpha
Helix 85	AJ4	C	444	459	Right-handed alpha
Helix 86	AJ5	C	462	477	Right-handed alpha
Helix 87	AJ6	C	481	499	Right-handed alpha
Helix 88	AJ7	C	506	511	Right-handed alpha
Helix 89	AJ8	C	516	537	Right-handed alpha
Helix 90	AJ9	C	549	553	Right-handed 310
Helix 91	AK1	C	568	575	Right-handed alpha
Helix 92	AK2	C	576	581	Right-handed alpha
Helix 93	AK3	C	599	609	Right-handed alpha
Helix 94	AK4	C	616	618	Right-handed 310
Helix 95	AK5	C	620	632	Right-handed alpha
Helix 96	AK6	C	648	653	Right-handed alpha
Helix 97	AK7	C	685	692	Right-handed 310
Helix 98	AK8	C	707	712	Right-handed alpha
Helix 99	AK9	C	713	716	Right-handed 310
Helix 100	AL1	C	740	747	Right-handed alpha
Helix 101	AL2	C	780	793	Right-handed alpha
Helix 102	AL3	C	809	814	Right-handed alpha
Helix 103	AL4	C	814	819	Right-handed alpha
Helix 104	AL5	C	833	836	Right-handed 310
Helix 105	AL6	C	849	853	Right-handed 310
Helix 106	AL7	C	854	868	Right-handed alpha
Helix 107	AL8	C	881	893	Right-handed alpha
Helix 108	AL9	C	896	898	Right-handed 310
Helix 109	AM1	C	907	914	Right-handed alpha
Helix 110	AM2	C	915	918	Right-handed 310
Helix 111	AM3	C	930	939	Right-handed alpha
Helix 112	AM4	C	950	953	Right-handed 310
Helix 113	AM5	C	954	964	Right-handed alpha
Helix 114	AM6	C	965	969	Right-handed 310
Helix 115	AM7	C	972	986	Right-handed alpha
Helix 116	AM8	C	986	1004	Right-handed alpha
Helix 117	AM9	C	1008	1029	Right-handed alpha
Helix 118	AN1	D	323	341	Right-handed alpha
Helix 119	AN2	D	342	357	Right-handed alpha
Helix 120	AN3	D	360	374	Right-handed alpha
Helix 121	AN4	D	376	391	Right-handed alpha
Helix 122	AN5	D	394	408	Right-handed alpha
Helix 123	AN6	D	410	425	Right-handed alpha
Helix 124	AN7	D	428	442	Right-handed alpha
Helix 125	AN8	D	444	459	Right-handed alpha
Helix 126	AN9	D	462	477	Right-handed alpha
Helix 127	AO1	D	481	499	Right-handed alpha
Helix 128	AO2	D	506	511	Right-handed alpha
Helix 129	AO3	D	516	537	Right-handed alpha
Helix 130	AO4	D	549	553	Right-handed 310
Helix 131	AO5	D	568	575	Right-handed alpha
Helix 132	AO6	D	576	581	Right-handed alpha
Helix 133	AO7	D	599	609	Right-handed alpha
Helix 134	AO8	D	616	618	Right-handed 310
Helix 135	AO9	D	620	632	Right-handed alpha
Helix 136	AP1	D	648	653	Right-handed alpha
Helix 137	AP2	D	685	692	Right-handed 310
Helix 138	AP3	D	707	712	Right-handed alpha
Helix 139	AP4	D	713	716	Right-handed 310
Helix 140	AP5	D	740	747	Right-handed alpha
Helix 141	AP6	D	780	793	Right-handed alpha
Helix 142	AP7	D	809	814	Right-handed alpha
Helix 143	AP8	D	814	819	Right-handed alpha
Helix 144	AP9	D	833	835	Right-handed 310
Helix 145	AQ1	D	849	853	Right-handed 310
Helix 146	AQ2	D	854	868	Right-handed alpha
Helix 147	AQ3	D	881	893	Right-handed alpha
Helix 148	AQ4	D	896	898	Right-handed 310
Helix 149	AQ5	D	907	914	Right-handed alpha
Helix 150	AQ6	D	915	918	Right-handed 310
Helix 151	AQ7	D	930	939	Right-handed alpha
Helix 152	AQ8	D	950	953	Right-handed 310
Helix 153	AQ9	D	954	964	Right-handed alpha
Helix 154	AR1	D	965	969	Right-handed 310
Helix 155	AR2	D	972	986	Right-handed alpha
Helix 156	AR3	D	986	1004	Right-handed alpha
Helix 157	AR4	D	1008	1029	Right-handed alpha

There are 12 sheets in PDB entry 8CM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	614	first strand
Strand 2	A	586	592	parallel
Strand 3	A	556	562	parallel
Strand 4	A	635	638	parallel
Strand 5	A	658	661	parallel
Strand 6	A	676	679	parallel
Strand 7	A	695	698	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	755	first strand
Strand 2	A	773	777	anti-parallel
Strand 3	A	719	721	parallel
Strand 4	A	734	737	anti-parallel
Strand 5	A	827	831	anti-parallel
Strand 6	A	802	806	parallel
Strand 7	A	796	799	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	900	904	first strand
Strand 2	A	872	877	parallel
Strand 3	A	843	845	parallel
Strand 4	A	920	922	parallel
Strand 5	A	943	944	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	611	614	first strand
Strand 2	B	586	592	parallel
Strand 3	B	556	562	parallel
Strand 4	B	635	638	parallel
Strand 5	B	658	661	parallel
Strand 6	B	676	679	parallel
Strand 7	B	695	698	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	755	first strand
Strand 2	B	773	777	anti-parallel
Strand 3	B	719	721	parallel
Strand 4	B	734	737	anti-parallel
Strand 5	B	827	831	anti-parallel
Strand 6	B	802	806	parallel
Strand 7	B	796	799	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	900	904	first strand
Strand 2	B	871	877	parallel
Strand 3	B	842	845	parallel
Strand 4	B	920	922	parallel
Strand 5	B	943	944	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	611	614	first strand
Strand 2	C	586	592	parallel
Strand 3	C	556	562	parallel
Strand 4	C	635	638	parallel
Strand 5	C	658	661	parallel
Strand 6	C	676	679	parallel
Strand 7	C	695	698	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	752	755	first strand
Strand 2	C	773	777	anti-parallel
Strand 3	C	719	721	parallel
Strand 4	C	734	737	anti-parallel
Strand 5	C	827	831	anti-parallel
Strand 6	C	802	806	parallel
Strand 7	C	796	799	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	900	904	first strand
Strand 2	C	872	877	parallel
Strand 3	C	843	845	parallel
Strand 4	C	920	922	parallel
Strand 5	C	943	944	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	614	first strand
Strand 2	D	586	592	parallel
Strand 3	D	556	562	parallel
Strand 4	D	635	638	parallel
Strand 5	D	658	661	parallel
Strand 6	D	676	679	parallel
Strand 7	D	695	698	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	752	755	first strand
Strand 2	D	773	777	anti-parallel
Strand 3	D	719	721	parallel
Strand 4	D	734	737	anti-parallel
Strand 5	D	827	831	anti-parallel
Strand 6	D	802	806	parallel
Strand 7	D	796	799	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	900	904	first strand
Strand 2	D	872	877	parallel
Strand 3	D	843	845	parallel
Strand 4	D	920	922	parallel
Strand 5	D	943	944	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CM9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CM9