Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CMA entry

There are 3 chains in PDB entry 8CMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1LYS 219
E
 ASN 334LEU 517
L
 ASP 1GLU 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8CMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
99 103Right-handed 310
Helix 3
AA3
H
161 163Right-handed 310
Helix 4
AA4
E
338 343Right-handed alpha
Helix 5
AA5
E
349 353Right-handed 310
Helix 6
AA6
E
364 370Right-handed alpha
Helix 7
AA7
E
384 390Right-handed 310
Helix 8
AA8
E
405 410Right-handed 310
Helix 9
AA9
E
416 422Right-handed alpha
Helix 10
AB1
E
438 443Right-handed alpha
Helix 11
AB2
L
79 83Right-handed 310
Helix 12
AB3
L
123 128Right-handed alpha
Helix 13
AB4
L
185 189Right-handed alpha
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There are 14 sheets in PDB entry 8CMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
77 83anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
107 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 150anti-parallel
Strand 3
H
181 189anti-parallel
Strand 4
H
168 170anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 159first strand
Strand 2
H
199 205anti-parallel
Strand 3
H
210 216anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 359first strand
Strand 2
E
394 403anti-parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
376 380anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
104 108parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
104 108parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
99 100anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 162anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 157first strand
Strand 2
L
146 151anti-parallel
Strand 3
L
197 200anti-parallel
Strand 4
L
207 208anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
193 194first strand
Strand 2
L
211 212anti-parallel
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