Analysis of interatomic Contacts of Structural Units in PDB entry:
8CML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CML entry

There are 4 chains in PDB entry 8CML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	ALA 120
E	GLU 20	LYS 670
B	LEU 679	ASP 1531
C	GLU 1	ALA 128

There are 31 helices in PDB entry 8CML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	88	92	Right-handed 310
Helix 2	AA2	E	302	309	Right-handed alpha
Helix 3	AA3	E	443	447	Right-handed 310
Helix 4	AA4	E	531	535	Right-handed 310
Helix 5	AA5	E	608	611	Right-handed 310
Helix 6	AA6	E	618	628	Right-handed alpha
Helix 7	AA7	E	629	631	Right-handed 310
Helix 8	AA8	E	641	649	Right-handed alpha
Helix 9	AA9	B	680	691	Right-handed alpha
Helix 10	AB1	B	692	703	Right-handed alpha
Helix 11	AB2	B	710	717	Right-handed alpha
Helix 12	AB3	B	721	739	Right-handed alpha
Helix 13	AB4	B	745	755	Right-handed alpha
Helix 14	AB5	B	984	992	Right-handed alpha
Helix 15	AB6	B	1007	1014	Right-handed alpha
Helix 16	AB7	B	1015	1029	Right-handed alpha
Helix 17	AB8	B	1030	1034	Right-handed 310
Helix 18	AB9	B	1037	1056	Right-handed alpha
Helix 19	AC1	B	1057	1060	Right-handed 310
Helix 20	AC2	B	1075	1090	Right-handed alpha
Helix 21	AC3	B	1096	1110	Right-handed alpha
Helix 22	AC4	B	1132	1155	Right-handed alpha
Helix 23	AC5	B	1161	1180	Right-handed alpha
Helix 24	AC6	B	1184	1197	Right-handed alpha
Helix 25	AC7	B	1202	1215	Right-handed alpha
Helix 26	AC8	B	1244	1261	Right-handed alpha
Helix 27	AC9	B	1267	1278	Right-handed alpha
Helix 28	AD1	B	1286	1304	Right-handed alpha
Helix 29	AD2	B	1435	1444	Right-handed alpha
Helix 30	AD3	C	28	31	Right-handed 310
Helix 31	AD4	C	62	65	Right-handed 310

There are 32 sheets in PDB entry 8CML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	113	117	parallel
Strand 3	A	92	96	anti-parallel
Strand 4	A	34	38	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	23	first strand
Strand 2	A	78	81	anti-parallel
Strand 3	A	70	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	85	first strand
Strand 2	E	37	44	anti-parallel
Strand 3	E	22	28	anti-parallel
Strand 4	E	651	654	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	E	112	120	parallel
Strand 3	E	101	108	anti-parallel
Strand 4	E	50	57	anti-parallel
Strand 5	E	65	73	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	130	first strand
Strand 2	E	143	148	anti-parallel
Strand 3	E	182	184	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	212	219	parallel
Strand 3	E	197	205	anti-parallel
Strand 4	E	159	164	anti-parallel
Strand 5	E	170	176	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	188	189	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	221	222	first strand
Strand 2	B	764	765	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	233	first strand
Strand 2	E	246	253	anti-parallel
Strand 3	E	296	301	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	238	first strand
Strand 2	E	346	347	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	262	272	anti-parallel
Strand 3	E	290	293	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	282	first strand
Strand 2	E	262	272	anti-parallel
Strand 3	E	322	331	anti-parallel
Strand 4	E	337	342	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	353	356	first strand
Strand 2	E	371	376	anti-parallel
Strand 3	E	417	420	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	403	first strand
Strand 2	E	387	396	anti-parallel
Strand 3	E	407	410	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	403	first strand
Strand 2	E	387	396	anti-parallel
Strand 3	E	428	437	anti-parallel
Strand 4	E	449	455	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	466	469	first strand
Strand 2	E	482	487	anti-parallel
Strand 3	E	524	528	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	508	516	first strand
Strand 2	E	498	505	anti-parallel
Strand 3	E	537	547	anti-parallel
Strand 4	E	552	562	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	572	575	first strand
Strand 2	E	587	593	anti-parallel
Strand 3	B	783	789	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	581	582	first strand
Strand 2	B	815	819	parallel
Strand 3	B	796	805	anti-parallel
Strand 4	E	598	606	anti-parallel
Strand 5	B	777	780	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	581	582	first strand
Strand 2	B	815	819	parallel
Strand 3	B	796	805	anti-parallel
Strand 4	B	808	811	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	827	first strand
Strand 2	B	838	847	anti-parallel
Strand 3	B	893	902	anti-parallel
Strand 4	B	865	866	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	827	first strand
Strand 2	B	838	847	anti-parallel
Strand 3	B	1485	1486	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	834	first strand
Strand 2	B	928	930	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	886	888	first strand
Strand 2	B	853	859	anti-parallel
Strand 3	B	910	916	anti-parallel
Strand 4	B	919	925	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	934	944	first strand
Strand 2	B	1357	1367	anti-parallel
Strand 3	B	974	980	anti-parallel
Strand 4	B	1338	1340	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	956	959	first strand
Strand 2	B	1346	1350	anti-parallel
Strand 3	B	1310	1317	anti-parallel
Strand 4	B	1322	1329	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1217	1219	first strand
Strand 2	B	1225	1227	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1377	1385	first strand
Strand 2	B	1400	1408	anti-parallel
Strand 3	B	1473	1481	anti-parallel
Strand 4	B	1432	1434	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1452	1456	first strand
Strand 2	B	1459	1464	anti-parallel
Strand 3	B	1422	1427	anti-parallel
Strand 4	B	1491	1497	anti-parallel
Strand 5	B	1504	1509	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	16	25	anti-parallel
Strand 3	C	78	86	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	13	first strand
Strand 2	C	123	126	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	33	38	anti-parallel
Strand 4	C	95	99	anti-parallel
Strand 5	C	116	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CML