Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CMO entry

There are 21 chains in PDB entry 8CMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	VAL 750
B	ALA 2	LYS 733
C	SER 2	TYR 81
D	TRP 53	ILE 194
E	VAL 35	PRO 95
F	ASP 63	ARG 227
G	GLY 31	GLN 123
I	ALA 63	ASN 103
J	MET 1	SER 40
K	ARG 25	LEU 113
L	MET 54	THR 189
1	ARG 31	PHE 224
Z	ARG 31	PHE 224
3	GLN 14	LYS 231
7	ALA 25	TYR 244
8	ARG 27	LEU 240
4	ALA 56	ARG 262
5	ASP 31	SER 256
6	ARG 29	TRP 254
9	ARG 28	TYR 211
2	GLY 161	GLY 230

There are185 helices in PDB entry 8CMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	42	Right-handed 310
Helix 2	AA2	A	46	52	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	65	95	Right-handed alpha
Helix 5	AA5	A	100	107	Right-handed alpha
Helix 6	AA6	A	123	128	Right-handed 310
Helix 7	AA7	A	143	150	Right-handed alpha
Helix 8	AA8	A	156	183	Right-handed alpha
Helix 9	AA9	A	187	192	Right-handed alpha
Helix 10	AB1	A	193	203	Right-handed alpha
Helix 11	AB2	A	205	220	Right-handed alpha
Helix 12	AB3	A	220	230	Right-handed alpha
Helix 13	AB4	A	233	237	Right-handed 310
Helix 14	AB5	A	239	246	Right-handed alpha
Helix 15	AB6	A	246	254	Right-handed alpha
Helix 16	AB7	A	255	258	Right-handed 310
Helix 17	AB8	A	261	266	Right-handed alpha
Helix 18	AB9	A	268	273	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	329	Right-handed alpha
Helix 21	AC3	A	340	348	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	416	Right-handed alpha
Helix 24	AC6	A	427	432	Right-handed alpha
Helix 25	AC7	A	433	465	Right-handed alpha
Helix 26	AC8	A	481	491	Right-handed alpha
Helix 27	AC9	A	507	511	Right-handed 310
Helix 28	AD1	A	529	556	Right-handed alpha
Helix 29	AD2	A	565	570	Right-handed alpha
Helix 30	AD3	A	588	618	Right-handed alpha
Helix 31	AD4	A	634	639	Right-handed alpha
Helix 32	AD5	A	643	648	Right-handed alpha
Helix 33	AD6	A	649	654	Right-handed alpha
Helix 34	AD7	A	654	659	Right-handed alpha
Helix 35	AD8	A	665	682	Right-handed alpha
Helix 36	AD9	A	683	685	Right-handed 310
Helix 37	AE1	A	689	707	Right-handed alpha
Helix 38	AE2	A	719	750	Right-handed alpha
Helix 39	AE3	B	10	16	Right-handed alpha
Helix 40	AE4	B	19	28	Right-handed alpha
Helix 41	AE5	B	31	35	Right-handed 310
Helix 42	AE6	B	39	72	Right-handed alpha
Helix 43	AE7	B	74	81	Right-handed alpha
Helix 44	AE8	B	98	105	Right-handed alpha
Helix 45	AE9	B	120	128	Right-handed alpha
Helix 46	AF1	B	132	157	Right-handed alpha
Helix 47	AF2	B	165	170	Right-handed alpha
Helix 48	AF3	B	171	182	Right-handed alpha
Helix 49	AF4	B	185	198	Right-handed alpha
Helix 50	AF5	B	198	204	Right-handed alpha
Helix 51	AF6	B	212	216	Right-handed 310
Helix 52	AF7	B	223	229	Right-handed alpha
Helix 53	AF8	B	230	236	Right-handed 310
Helix 54	AF9	B	270	290	Right-handed alpha
Helix 55	AG1	B	301	308	Right-handed alpha
Helix 56	AG2	B	323	329	Right-handed alpha
Helix 57	AG3	B	330	356	Right-handed alpha
Helix 58	AG4	B	365	398	Right-handed alpha
Helix 59	AG5	B	409	414	Right-handed alpha
Helix 60	AG6	B	415	447	Right-handed alpha
Helix 61	AG7	B	449	453	Right-handed 310
Helix 62	AG8	B	458	469	Right-handed alpha
Helix 63	AG9	B	477	481	Right-handed 310
Helix 64	AH1	B	484	491	Right-handed alpha
Helix 65	AH2	B	494	503	Right-handed alpha
Helix 66	AH3	B	514	541	Right-handed alpha
Helix 67	AH4	B	551	555	Right-handed 310
Helix 68	AH5	B	573	605	Right-handed alpha
Helix 69	AH6	B	606	614	Right-handed alpha
Helix 70	AH7	B	616	623	Right-handed alpha
Helix 71	AH8	B	624	633	Right-handed alpha
Helix 72	AH9	B	644	667	Right-handed alpha
Helix 73	AI1	B	670	686	Right-handed alpha
Helix 74	AI2	B	702	732	Right-handed alpha
Helix 75	AI3	C	17	21	Right-handed 310
Helix 76	AI4	C	54	58	Right-handed 310
Helix 77	AI5	D	76	81	Right-handed alpha
Helix 78	AI6	D	117	132	Right-handed alpha
Helix 79	AI7	D	174	178	Right-handed 310
Helix 80	AI8	D	180	185	Right-handed 310
Helix 81	AI9	E	89	91	Right-handed 310
Helix 82	AJ1	F	73	86	Right-handed alpha
Helix 83	AJ2	F	98	121	Right-handed alpha
Helix 84	AJ3	F	136	143	Right-handed alpha
Helix 85	AJ4	F	149	175	Right-handed alpha
Helix 86	AJ5	F	181	186	Right-handed alpha
Helix 87	AJ6	F	188	196	Right-handed alpha
Helix 88	AJ7	F	197	200	Right-handed 310
Helix 89	AJ8	F	201	211	Right-handed alpha
Helix 90	AJ9	G	33	52	Right-handed alpha
Helix 91	AK1	G	53	67	Right-handed alpha
Helix 92	AK2	G	78	82	Right-handed 310
Helix 93	AK3	G	86	90	Right-handed 310
Helix 94	AK4	G	93	97	Right-handed 310
Helix 95	AK5	G	98	122	Right-handed alpha
Helix 96	AK6	I	75	83	Right-handed alpha
Helix 97	AK7	I	85	101	Right-handed alpha
Helix 98	AK8	J	2	8	Right-handed alpha
Helix 99	AK9	J	10	33	Right-handed alpha
Helix 100	AL1	K	32	47	Right-handed alpha
Helix 101	AL2	K	85	110	Right-handed alpha
Helix 102	AL3	L	62	69	Right-handed alpha
Helix 103	AL4	L	70	72	Right-handed 310
Helix 104	AL5	L	82	95	Right-handed alpha
Helix 105	AL6	L	96	104	Right-handed alpha
Helix 106	AL7	L	114	138	Right-handed alpha
Helix 107	AL8	L	159	162	Right-handed 310
Helix 108	AL9	L	163	187	Right-handed alpha
Helix 109	AM1	1	63	94	Right-handed alpha
Helix 110	AM2	1	104	109	Right-handed alpha
Helix 111	AM3	1	122	144	Right-handed alpha
Helix 112	AM4	1	154	158	Right-handed 310
Helix 113	AM5	1	167	195	Right-handed alpha
Helix 114	AM6	1	198	209	Right-handed alpha
Helix 115	AM7	1	210	213	Right-handed 310
Helix 116	AM8	Z	63	95	Right-handed alpha
Helix 117	AM9	Z	101	103	Right-handed 310
Helix 118	AN1	Z	104	109	Right-handed alpha
Helix 119	AN2	Z	122	144	Right-handed alpha
Helix 120	AN3	Z	147	152	Right-handed alpha
Helix 121	AN4	Z	154	158	Right-handed 310
Helix 122	AN5	Z	166	195	Right-handed alpha
Helix 123	AN6	Z	198	209	Right-handed alpha
Helix 124	AN7	Z	214	218	Right-handed 310
Helix 125	AN8	3	19	26	Right-handed alpha
Helix 126	AN9	3	48	51	Right-handed 310
Helix 127	AO1	3	52	72	Right-handed alpha
Helix 128	AO2	3	75	84	Right-handed alpha
Helix 129	AO3	3	97	101	Right-handed 310
Helix 130	AO4	3	109	134	Right-handed alpha
Helix 131	AO5	3	145	151	Right-handed 310
Helix 132	AO6	3	160	165	Right-handed alpha
Helix 133	AO7	3	173	206	Right-handed alpha
Helix 134	AO8	3	208	217	Right-handed alpha
Helix 135	AO9	3	224	229	Right-handed alpha
Helix 136	AP1	7	61	96	Right-handed alpha
Helix 137	AP2	7	101	105	Right-handed 310
Helix 138	AP3	7	119	144	Right-handed alpha
Helix 139	AP4	7	157	161	Right-handed 310
Helix 140	AP5	7	182	215	Right-handed alpha
Helix 141	AP6	7	220	228	Right-handed alpha
Helix 142	AP7	8	58	81	Right-handed alpha
Helix 143	AP8	8	84	91	Right-handed alpha
Helix 144	AP9	8	99	112	Right-handed alpha
Helix 145	AQ1	8	114	139	Right-handed alpha
Helix 146	AQ2	8	152	156	Right-handed 310
Helix 147	AQ3	8	172	176	Right-handed 310
Helix 148	AQ4	8	177	210	Right-handed alpha
Helix 149	AQ5	8	212	223	Right-handed alpha
Helix 150	AQ6	8	229	233	Right-handed 310
Helix 151	AQ7	4	89	112	Right-handed alpha
Helix 152	AQ8	4	114	124	Right-handed alpha
Helix 153	AQ9	4	127	132	Right-handed alpha
Helix 154	AR1	4	133	137	Right-handed 310
Helix 155	AR2	4	145	170	Right-handed alpha
Helix 156	AR3	4	194	198	Right-handed 310
Helix 157	AR4	4	206	235	Right-handed alpha
Helix 158	AR5	4	238	249	Right-handed alpha
Helix 159	AR6	4	254	262	Right-handed alpha
Helix 160	AR7	5	63	95	Right-handed alpha
Helix 161	AR8	5	99	103	Right-handed 310
Helix 162	AR9	5	110	114	Right-handed 310
Helix 163	AS1	5	117	142	Right-handed alpha
Helix 164	AS2	5	166	170	Right-handed 310
Helix 165	AS3	5	178	208	Right-handed alpha
Helix 166	AS4	5	210	221	Right-handed alpha
Helix 167	AS5	6	56	59	Right-handed 310
Helix 168	AS6	6	60	91	Right-handed alpha
Helix 169	AS7	6	99	104	Right-handed alpha
Helix 170	AS8	6	109	134	Right-handed alpha
Helix 171	AS9	6	166	195	Right-handed alpha
Helix 172	AT1	6	198	209	Right-handed alpha
Helix 173	AT2	6	210	213	Right-handed 310
Helix 174	AT3	6	214	218	Right-handed 310
Helix 175	AT4	9	59	91	Right-handed alpha
Helix 176	AT5	9	107	132	Right-handed alpha
Helix 177	AT6	9	151	179	Right-handed alpha
Helix 178	AT7	9	182	191	Right-handed alpha
Helix 179	AT8	9	197	202	Right-handed alpha
Helix 180	AT9	9	204	209	Right-handed alpha
Helix 181	AU1	2	170	174	Right-handed 310
Helix 182	AU2	2	182	192	Right-handed alpha
Helix 183	AU3	2	197	201	Right-handed 310
Helix 184	AU4	2	203	215	Right-handed alpha
Helix 185	AU5	2	216	222	Right-handed alpha

There are 17 sheets in PDB entry 8CMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	136	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	516	first strand
Strand 2	A	521	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	29	first strand
Strand 2	C	39	41	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	137	141	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	103	105	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	94	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	113	114	first strand
Strand 2	1	117	118	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	113	114	first strand
Strand 2	Z	117	118	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	239	242	first strand
Strand 2	5	245	248	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	220	221	first strand
Strand 2	6	226	227	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	236	239	first strand
Strand 2	6	242	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMO