Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CMU entry

There are 4 chains in PDB entry 8CMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 9	PRO 730
B	PHE 9	PRO 730
C	PRO 24	LYS 148
D	PRO 24	LYS 148

There are 37 helices in PDB entry 8CMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	45	Right-handed 310
Helix 2	AA2	A	59	65	Right-handed alpha
Helix 3	AA3	A	176	179	Right-handed 310
Helix 4	AA4	A	198	206	Right-handed alpha
Helix 5	AA5	A	234	246	Right-handed alpha
Helix 6	AA6	A	249	253	Right-handed 310
Helix 7	AA7	A	255	268	Right-handed alpha
Helix 8	AA8	A	289	293	Right-handed 310
Helix 9	AA9	A	295	307	Right-handed alpha
Helix 10	AB1	A	314	330	Right-handed alpha
Helix 11	AB2	A	415	420	Right-handed alpha
Helix 12	AB3	A	428	438	Right-handed alpha
Helix 13	AB4	A	478	483	Right-handed alpha
Helix 14	AB5	A	488	501	Right-handed alpha
Helix 15	AB6	A	508	512	Right-handed 310
Helix 16	AB7	A	591	596	Right-handed alpha
Helix 17	AB8	A	600	602	Right-handed 310
Helix 18	AB9	B	41	45	Right-handed 310
Helix 19	AC1	B	59	65	Right-handed alpha
Helix 20	AC2	B	176	179	Right-handed 310
Helix 21	AC3	B	198	206	Right-handed alpha
Helix 22	AC4	B	234	246	Right-handed alpha
Helix 23	AC5	B	249	253	Right-handed 310
Helix 24	AC6	B	255	268	Right-handed alpha
Helix 25	AC7	B	289	293	Right-handed 310
Helix 26	AC8	B	295	307	Right-handed alpha
Helix 27	AC9	B	314	330	Right-handed alpha
Helix 28	AD1	B	415	421	Right-handed alpha
Helix 29	AD2	B	428	438	Right-handed alpha
Helix 30	AD3	B	478	483	Right-handed alpha
Helix 31	AD4	B	488	501	Right-handed alpha
Helix 32	AD5	B	591	596	Right-handed alpha
Helix 33	AD6	B	600	602	Right-handed 310
Helix 34	AD7	C	37	42	Right-handed alpha
Helix 35	AD8	C	42	47	Right-handed alpha
Helix 36	AD9	D	37	42	Right-handed alpha
Helix 37	AE1	D	42	47	Right-handed alpha

There are 32 sheets in PDB entry 8CMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	156	166	anti-parallel
Strand 4	A	181	184	anti-parallel
Strand 5	A	75	78	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	156	166	anti-parallel
Strand 4	A	99	105	anti-parallel
Strand 5	A	117	120	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	82	89	anti-parallel
Strand 3	A	142	148	anti-parallel
Strand 4	A	132	139	anti-parallel
Strand 5	A	122	123	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	217	first strand
Strand 2	A	220	227	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	310	313	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	414	first strand
Strand 2	A	392	402	anti-parallel
Strand 3	A	371	381	anti-parallel
Strand 4	A	333	341	anti-parallel
Strand 5	A	465	468	anti-parallel
Strand 6	A	475	477	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	355	first strand
Strand 2	A	439	445	parallel
Strand 3	A	451	457	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	519	525	first strand
Strand 2	A	534	542	anti-parallel
Strand 3	A	583	590	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	578	first strand
Strand 2	A	548	559	anti-parallel
Strand 3	A	604	613	anti-parallel
Strand 4	A	619	627	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	638	first strand
Strand 2	A	647	654	anti-parallel
Strand 3	A	689	696	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	684	first strand
Strand 2	A	661	670	anti-parallel
Strand 3	A	702	711	anti-parallel
Strand 4	A	716	726	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	156	166	anti-parallel
Strand 4	B	181	184	anti-parallel
Strand 5	B	75	78	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	B	156	166	anti-parallel
Strand 4	B	99	105	anti-parallel
Strand 5	B	117	120	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	82	89	anti-parallel
Strand 3	B	142	148	anti-parallel
Strand 4	B	132	139	anti-parallel
Strand 5	B	122	123	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	217	first strand
Strand 2	B	220	227	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	310	313	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	414	first strand
Strand 2	B	392	402	anti-parallel
Strand 3	B	371	381	anti-parallel
Strand 4	B	333	341	anti-parallel
Strand 5	B	464	468	anti-parallel
Strand 6	B	475	477	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	355	first strand
Strand 2	B	439	445	parallel
Strand 3	B	451	457	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	519	525	first strand
Strand 2	B	534	542	anti-parallel
Strand 3	B	583	590	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	578	first strand
Strand 2	B	548	559	anti-parallel
Strand 3	B	604	613	anti-parallel
Strand 4	B	619	627	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	638	first strand
Strand 2	B	647	654	anti-parallel
Strand 3	B	689	696	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	684	first strand
Strand 2	B	661	670	anti-parallel
Strand 3	B	702	711	anti-parallel
Strand 4	B	716	726	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	54	59	anti-parallel
Strand 3	C	71	77	anti-parallel
Strand 4	C	80	82	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	88	89	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	107	108	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	101	first strand
Strand 2	C	113	118	anti-parallel
Strand 3	C	130	134	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	146	147	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	35	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	71	77	anti-parallel
Strand 4	D	80	82	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	88	89	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	107	108	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	113	118	anti-parallel
Strand 3	D	130	136	anti-parallel
Strand 4	D	139	140	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	146	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMU