Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CMW entry

There are 2 chains in PDB entry 8CMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2TYR 670
B
 ILE 5MET 605
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8CMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 44Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
59 64Right-handed alpha
Helix 4
AA4
A
92 129Right-handed alpha
Helix 5
AA5
A
138 150Right-handed alpha
Helix 6
AA6
A
157 175Right-handed alpha
Helix 7
AA7
A
182 189Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
A
207 219Right-handed alpha
Helix 10
AB1
A
225 256Right-handed alpha
Helix 11
AB2
A
266 270Right-handed 310
Helix 12
AB3
A
283 297Right-handed alpha
Helix 13
AB4
A
297 303Right-handed alpha
Helix 14
AB5
A
315 326Right-handed alpha
Helix 15
AB6
A
332 336Right-handed 310
Helix 16
AB7
A
337 342Right-handed alpha
Helix 17
AB8
A
357 365Right-handed alpha
Helix 18
AB9
A
388 390Right-handed 310
Helix 19
AC1
A
391 409Right-handed alpha
Helix 20
AC2
A
429 438Right-handed alpha
Helix 21
AC3
A
445 455Right-handed alpha
Helix 22
AC4
A
475 488Right-handed alpha
Helix 23
AC5
A
496 506Right-handed alpha
Helix 24
AC6
A
509 516Right-handed 310
Helix 25
AC7
A
517 532Right-handed alpha
Helix 26
AC8
A
548 564Right-handed alpha
Helix 27
AC9
A
566 570Right-handed 310
Helix 28
AD1
A
581 594Right-handed alpha
Helix 29
AD2
A
609 618Right-handed alpha
Helix 30
AD3
A
618 624Right-handed alpha
Helix 31
AD4
A
633 662Right-handed alpha
Helix 32
AD5
B
7 12Right-handed 310
Helix 33
AD6
B
21 51Right-handed alpha
Helix 34
AD7
B
65 72Right-handed alpha
Helix 35
AD8
B
78 80Right-handed 310
Helix 36
AD9
B
81 92Right-handed alpha
Helix 37
AE1
B
98 121Right-handed alpha
Helix 38
AE2
B
122 124Right-handed 310
Helix 39
AE3
B
140 147Right-handed alpha
Helix 40
AE4
B
148 153Right-handed alpha
Helix 41
AE5
B
168 182Right-handed alpha
Helix 42
AE6
B
191 199Right-handed alpha
Helix 43
AE7
B
204 207Right-handed 310
Helix 44
AE8
B
214 217Right-handed 310
Helix 45
AE9
B
218 232Right-handed alpha
Helix 46
AF1
B
239 251Right-handed alpha
Helix 47
AF2
B
262 275Right-handed alpha
Helix 48
AF3
B
286 290Right-handed 310
Helix 49
AF4
B
303 313Right-handed alpha
Helix 50
AF5
B
328 332Right-handed 310
Helix 51
AF6
B
337 339Right-handed 310
Helix 52
AF7
B
375 379Right-handed 310
Helix 53
AF8
B
401 416Right-handed alpha
Helix 54
AF9
B
425 428Right-handed 310
Helix 55
AG1
B
435 441Right-handed alpha
Helix 56
AG2
B
443 459Right-handed alpha
Helix 57
AG3
B
473 498Right-handed alpha
Helix 58
AG4
B
510 515Right-handed 310
Helix 59
AG5
B
535 546Right-handed alpha
Helix 60
AG6
B
568 577Right-handed alpha
Helix 61
AG7
B
630 639Right-handed alpha
Helix 62
AG8
B
651 657Right-handed 310
Helix 63
AG9
B
661 668Right-handed 310
Helix 64
AH1
B
674 681Right-handed alpha
Helix 65
AH2
B
681 692Right-handed alpha
Helix 66
AH3
B
695 702Right-handed 310
Helix 67
AH4
B
710 721Right-handed alpha
Helix 68
AH5
B
723 728Right-handed 310
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There are 10 sheets in PDB entry 8CMW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
76 77anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 265first strand
Strand 2
A
422 426anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 331first strand
Strand 2
A
308 314parallel
Strand 3
A
274 280parallel
Strand 4
A
345 350parallel
Strand 5
A
369 372parallel
Strand 6
A
383 384parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
491 495parallel
Strand 3
A
461 464parallel
Strand 4
A
572 576parallel
Strand 5
A
597 600parallel
Strand 6
A
627 630parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 213first strand
Strand 2
B
185 189parallel
Strand 3
B
159 164parallel
Strand 4
B
253 258parallel
Strand 5
B
279 281parallel
Strand 6
B
295 297parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 385first strand
Strand 2
B
341 346parallel
Strand 3
B
430 434anti-parallel
Strand 4
B
420 423anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 358first strand
Strand 2
B
387 394parallel
Strand 3
B
465 471anti-parallel
Strand 4
B
369 372parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
521 523first strand
Strand 2
B
505 509anti-parallel
Strand 3
B
553 555anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
559 561first strand
Strand 2
B
566 567anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
647 650first strand
Strand 2
B
603 607anti-parallel
Strand 3
B
614 618anti-parallel
Strand 4
B
670 672parallel
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