Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CMX entry

There are 4 chains in PDB entry 8CMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 85HIS 358
A
 TYR 360GLY 573
B
 VAL 87HIS 358
B
 TYR 360GLY 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8CMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 103Right-handed alpha
Helix 2
AA2
A
121 134Right-handed alpha
Helix 3
AA3
A
139 143Right-handed 310
Helix 4
AA4
A
153 168Right-handed alpha
Helix 5
AA5
A
178 196Right-handed alpha
Helix 6
AA6
A
209 230Right-handed alpha
Helix 7
AA7
A
244 254Right-handed alpha
Helix 8
AA8
A
270 278Right-handed alpha
Helix 9
AA9
A
299 311Right-handed alpha
Helix 10
AB1
A
323 332Right-handed alpha
Helix 11
AB2
A
337 341Right-handed 310
Helix 12
AB3
A
374 380Right-handed alpha
Helix 13
AB4
A
403 443Right-handed alpha
Helix 14
AB5
A
445 449Right-handed alpha
Helix 15
AB6
A
471 481Right-handed alpha
Helix 16
AB7
A
500 505Right-handed alpha
Helix 17
AB8
A
506 532Right-handed alpha
Helix 18
AB9
A
547 552Right-handed alpha
Helix 19
AC1
A
555 570Right-handed alpha
Helix 20
AC2
B
88 103Right-handed alpha
Helix 21
AC3
B
121 134Right-handed alpha
Helix 22
AC4
B
139 143Right-handed 310
Helix 23
AC5
B
153 167Right-handed alpha
Helix 24
AC6
B
178 196Right-handed alpha
Helix 25
AC7
B
209 230Right-handed alpha
Helix 26
AC8
B
244 254Right-handed alpha
Helix 27
AC9
B
270 278Right-handed alpha
Helix 28
AD1
B
299 311Right-handed alpha
Helix 29
AD2
B
321 332Right-handed alpha
Helix 30
AD3
B
337 341Right-handed 310
Helix 31
AD4
B
374 380Right-handed alpha
Helix 32
AD5
B
403 443Right-handed alpha
Helix 33
AD6
B
445 449Right-handed alpha
Helix 34
AD7
B
471 482Right-handed alpha
Helix 35
AD8
B
500 505Right-handed alpha
Helix 36
AD9
B
506 532Right-handed alpha
Helix 37
AE1
B
541 552Right-handed alpha
Helix 38
AE2
B
555 570Right-handed alpha
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There are 6 sheets in PDB entry 8CMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 207first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
350 355anti-parallel
Strand 4
A
314 317parallel
Strand 5
A
282 288parallel
Strand 6
A
235 239parallel
Strand 7
A
256 260parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
393 395anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 452first strand
Strand 2
A
460 465anti-parallel
Strand 3
A
494 498anti-parallel
Strand 4
A
487 489anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 207first strand
Strand 2
B
368 372anti-parallel
Strand 3
B
350 355anti-parallel
Strand 4
B
314 317parallel
Strand 5
B
282 288parallel
Strand 6
B
235 239parallel
Strand 7
B
256 260parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
383 385first strand
Strand 2
B
393 395anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
450 452first strand
Strand 2
B
460 465anti-parallel
Strand 3
B
495 498anti-parallel
Strand 4
B
487 488anti-parallel
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