Analysis of interatomic Contacts of Structural Units in PDB entry:
8CMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CMY entry

There are 16 chains in PDB entry 8CMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 11GLU 456
B
THR 6ARG 113
C
GLU 11GLU 456
D
THR 6ARG 113
E
GLU 11GLU 456
F
THR 6ARG 113
G
GLU 11GLU 456
H
THR 6ARG 113
I
GLU 11GLU 456
J
THR 6ARG 113
K
GLU 11GLU 456
L
THR 6ARG 113
M
GLU 11GLU 456
N
THR 6ARG 113
O
GLU 11GLU 456
P
THR 6ARG 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are182 helices in PDB entry 8CMY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
41 55Right-handed alpha
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
68 73Right-handed alpha
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
104 117Right-handed alpha
Helix 6
AA6
A
133 140Right-handed alpha
Helix 7
AA7
A
145 155Right-handed alpha
Helix 8
AA8
A
173 186Right-handed alpha
Helix 9
AA9
A
205 225Right-handed alpha
Helix 10
AB1
A
238 252Right-handed alpha
Helix 11
AB2
A
261 265Right-handed alpha
Helix 12
AB3
A
265 279Right-handed alpha
Helix 13
AB4
A
290 295Right-handed alpha
Helix 14
AB5
A
302 314Right-handed alpha
Helix 15
AB6
A
330 343Right-handed alpha
Helix 16
AB7
A
375 377Right-handed 310
Helix 17
AB8
A
378 384Right-handed alpha
Helix 18
AB9
A
405 425Right-handed alpha
Helix 19
AC1
A
432 442Right-handed alpha
Helix 20
AC2
A
444 454Right-handed alpha
Helix 21
AC3
B
26 40Right-handed alpha
Helix 22
AC4
B
50 54Right-handed 310
Helix 23
AC5
B
74 86Right-handed alpha
Helix 24
AC6
C
41 55Right-handed alpha
Helix 25
AC7
C
62 66Right-handed 310
Helix 26
AC8
C
96 100Right-handed 310
Helix 27
AC9
C
105 113Right-handed alpha
Helix 28
AD1
C
115 119Right-handed 310
Helix 29
AD2
C
133 139Right-handed alpha
Helix 30
AD3
C
147 155Right-handed alpha
Helix 31
AD4
C
173 187Right-handed alpha
Helix 32
AD5
C
205 225Right-handed alpha
Helix 33
AD6
C
238 252Right-handed alpha
Helix 34
AD7
C
261 265Right-handed alpha
Helix 35
AD8
C
265 280Right-handed alpha
Helix 36
AD9
C
289 295Right-handed alpha
Helix 37
AE1
C
302 314Right-handed alpha
Helix 38
AE2
C
330 343Right-handed alpha
Helix 39
AE3
C
379 384Right-handed alpha
Helix 40
AE4
C
405 425Right-handed alpha
Helix 41
AE5
C
432 442Right-handed alpha
Helix 42
AE6
C
444 454Right-handed alpha
Helix 43
AE7
D
26 40Right-handed alpha
Helix 44
AE8
D
50 54Right-handed 310
Helix 45
AE9
D
71 86Right-handed alpha
Helix 46
AF1
E
41 55Right-handed alpha
Helix 47
AF2
E
61 66Right-handed 310
Helix 48
AF3
E
96 100Right-handed 310
Helix 49
AF4
E
105 117Right-handed alpha
Helix 50
AF5
E
133 140Right-handed alpha
Helix 51
AF6
E
145 155Right-handed alpha
Helix 52
AF7
E
173 187Right-handed alpha
Helix 53
AF8
E
205 225Right-handed alpha
Helix 54
AF9
E
238 252Right-handed alpha
Helix 55
AG1
E
261 265Right-handed alpha
Helix 56
AG2
E
265 279Right-handed alpha
Helix 57
AG3
E
290 295Right-handed alpha
Helix 58
AG4
E
302 314Right-handed alpha
Helix 59
AG5
E
330 343Right-handed alpha
Helix 60
AG6
E
375 377Right-handed 310
Helix 61
AG7
E
378 384Right-handed alpha
Helix 62
AG8
E
403 425Right-handed alpha
Helix 63
AG9
E
432 442Right-handed alpha
Helix 64
AH1
E
444 454Right-handed alpha
Helix 65
AH2
F
26 40Right-handed alpha
Helix 66
AH3
F
50 54Right-handed 310
Helix 67
AH4
F
74 86Right-handed alpha
Helix 68
AH5
G
41 55Right-handed alpha
Helix 69
AH6
G
61 66Right-handed 310
Helix 70
AH7
G
96 100Right-handed 310
Helix 71
AH8
G
104 114Right-handed alpha
Helix 72
AH9
G
115 119Right-handed 310
Helix 73
AI1
G
133 140Right-handed alpha
Helix 74
AI2
G
147 155Right-handed alpha
Helix 75
AI3
G
173 188Right-handed alpha
Helix 76
AI4
G
205 225Right-handed alpha
Helix 77
AI5
G
238 252Right-handed alpha
Helix 78
AI6
G
261 280Right-handed alpha
Helix 79
AI7
G
290 295Right-handed alpha
Helix 80
AI8
G
302 314Right-handed alpha
Helix 81
AI9
G
330 343Right-handed alpha
Helix 82
AJ1
G
378 387Right-handed alpha
Helix 83
AJ2
G
405 424Right-handed alpha
Helix 84
AJ3
G
432 442Right-handed alpha
Helix 85
AJ4
G
444 454Right-handed alpha
Helix 86
AJ5
H
26 40Right-handed alpha
Helix 87
AJ6
H
50 54Right-handed 310
Helix 88
AJ7
H
74 86Right-handed alpha
Helix 89
AJ8
I
41 55Right-handed alpha
Helix 90
AJ9
I
62 66Right-handed 310
Helix 91
AK1
I
96 100Right-handed 310
Helix 92
AK2
I
105 113Right-handed alpha
Helix 93
AK3
I
115 119Right-handed 310
Helix 94
AK4
I
133 138Right-handed alpha
Helix 95
AK5
I
146 155Right-handed alpha
Helix 96
AK6
I
173 186Right-handed alpha
Helix 97
AK7
I
205 225Right-handed alpha
Helix 98
AK8
I
238 253Right-handed alpha
Helix 99
AK9
I
261 280Right-handed alpha
Helix 100
AL1
I
289 295Right-handed alpha
Helix 101
AL2
I
302 314Right-handed alpha
Helix 102
AL3
I
330 343Right-handed alpha
Helix 103
AL4
I
375 377Right-handed 310
Helix 104
AL5
I
378 387Right-handed alpha
Helix 105
AL6
I
404 425Right-handed alpha
Helix 106
AL7
I
432 442Right-handed alpha
Helix 107
AL8
I
444 454Right-handed alpha
Helix 108
AL9
J
26 40Right-handed alpha
Helix 109
AM1
J
50 54Right-handed 310
Helix 110
AM2
J
71 86Right-handed alpha
Helix 111
AM3
K
41 55Right-handed alpha
Helix 112
AM4
K
61 66Right-handed 310
Helix 113
AM5
K
68 73Right-handed alpha
Helix 114
AM6
K
96 100Right-handed 310
Helix 115
AM7
K
104 113Right-handed alpha
Helix 116
AM8
K
115 119Right-handed 310
Helix 117
AM9
K
133 140Right-handed alpha
Helix 118
AN1
K
145 155Right-handed alpha
Helix 119
AN2
K
173 187Right-handed alpha
Helix 120
AN3
K
205 225Right-handed alpha
Helix 121
AN4
K
238 252Right-handed alpha
Helix 122
AN5
K
261 265Right-handed alpha
Helix 123
AN6
K
265 280Right-handed alpha
Helix 124
AN7
K
290 295Right-handed alpha
Helix 125
AN8
K
302 314Right-handed alpha
Helix 126
AN9
K
330 343Right-handed alpha
Helix 127
AO1
K
378 387Right-handed alpha
Helix 128
AO2
K
405 424Right-handed alpha
Helix 129
AO3
K
432 438Right-handed alpha
Helix 130
AO4
K
440 443Right-handed 310
Helix 131
AO5
K
444 454Right-handed alpha
Helix 132
AO6
L
26 40Right-handed alpha
Helix 133
AO7
L
50 54Right-handed 310
Helix 134
AO8
L
71 86Right-handed alpha
Helix 135
AO9
M
41 55Right-handed alpha
Helix 136
AP1
M
61 66Right-handed 310
Helix 137
AP2
M
96 100Right-handed 310
Helix 138
AP3
M
104 114Right-handed alpha
Helix 139
AP4
M
115 119Right-handed 310
Helix 140
AP5
M
133 140Right-handed alpha
Helix 141
AP6
M
146 155Right-handed alpha
Helix 142
AP7
M
173 187Right-handed alpha
Helix 143
AP8
M
205 225Right-handed alpha
Helix 144
AP9
M
238 253Right-handed alpha
Helix 145
AQ1
M
261 265Right-handed alpha
Helix 146
AQ2
M
265 280Right-handed alpha
Helix 147
AQ3
M
290 295Right-handed alpha
Helix 148
AQ4
M
302 314Right-handed alpha
Helix 149
AQ5
M
330 335Right-handed alpha
Helix 150
AQ6
M
338 343Right-handed alpha
Helix 151
AQ7
M
375 377Right-handed 310
Helix 152
AQ8
M
378 387Right-handed alpha
Helix 153
AQ9
M
405 425Right-handed alpha
Helix 154
AR1
M
432 442Right-handed alpha
Helix 155
AR2
M
444 454Right-handed alpha
Helix 156
AR3
N
26 41Right-handed alpha
Helix 157
AR4
N
50 54Right-handed 310
Helix 158
AR5
N
74 86Right-handed alpha
Helix 159
AR6
O
41 53Right-handed alpha
Helix 160
AR7
O
62 66Right-handed 310
Helix 161
AR8
O
68 73Right-handed alpha
Helix 162
AR9
O
96 100Right-handed 310
Helix 163
AS1
O
104 113Right-handed alpha
Helix 164
AS2
O
115 119Right-handed 310
Helix 165
AS3
O
133 140Right-handed alpha
Helix 166
AS4
O
146 155Right-handed alpha
Helix 167
AS5
O
173 187Right-handed alpha
Helix 168
AS6
O
205 225Right-handed alpha
Helix 169
AS7
O
238 252Right-handed alpha
Helix 170
AS8
O
261 265Right-handed alpha
Helix 171
AS9
O
265 279Right-handed alpha
Helix 172
AT1
O
289 294Right-handed alpha
Helix 173
AT2
O
302 314Right-handed alpha
Helix 174
AT3
O
330 343Right-handed alpha
Helix 175
AT4
O
375 378Right-handed 310
Helix 176
AT5
O
379 387Right-handed alpha
Helix 177
AT6
O
405 425Right-handed alpha
Helix 178
AT7
O
432 442Right-handed alpha
Helix 179
AT8
O
444 454Right-handed alpha
Helix 180
AT9
P
26 40Right-handed alpha
Helix 181
AU1
P
50 54Right-handed 310
Helix 182
AU2
P
71 86Right-handed alpha
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There are 37 sheets in PDB entry 8CMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
75 81first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
124 130anti-parallel
Strand 5
A
300 301parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 164first strand
Strand 2
A
390 394parallel
Strand 3
A
367 370parallel
Strand 4
A
317 319parallel
Strand 5
A
282 286parallel
Strand 6
A
256 260parallel
Strand 7
A
229 233parallel
Strand 8
A
191 193parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
345 346first strand
Strand 2
A
358 359anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
60 61first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
91 97anti-parallel
Strand 4
B
102 110anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
75 81first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
31 36anti-parallel
Strand 4
C
122 127anti-parallel
Strand 5
C
300 301parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
161 164first strand
Strand 2
C
390 394parallel
Strand 3
C
367 370parallel
Strand 4
C
317 319parallel
Strand 5
C
282 286parallel
Strand 6
C
256 260parallel
Strand 7
C
232 233parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
345 346first strand
Strand 2
C
358 359anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
60 61first strand
Strand 2
D
43 48anti-parallel
Strand 3
D
91 96anti-parallel
Strand 4
D
105 110anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
75 81first strand
Strand 2
E
89 95anti-parallel
Strand 3
E
28 36anti-parallel
Strand 4
E
122 131anti-parallel
Strand 5
E
300 301parallel
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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
161 164first strand
Strand 2
E
390 394parallel
Strand 3
E
367 370parallel
Strand 4
E
317 319parallel
Strand 5
E
282 286parallel
Strand 6
E
256 260parallel
Strand 7
E
229 233parallel
Strand 8
E
191 193parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
345 346first strand
Strand 2
E
358 359anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
60 61first strand
Strand 2
F
43 49anti-parallel
Strand 3
F
90 96anti-parallel
Strand 4
F
103 110anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
75 80first strand
Strand 2
G
89 95anti-parallel
Strand 3
G
28 36anti-parallel
Strand 4
G
122 131anti-parallel
Strand 5
G
299 301parallel
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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
161 164first strand
Strand 2
G
390 394parallel
Strand 3
G
367 370parallel
Strand 4
G
317 319parallel
Strand 5
G
282 286parallel
Strand 6
G
256 260parallel
Strand 7
G
229 233parallel
Strand 8
G
191 193parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
345 346first strand
Strand 2
G
358 359anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
60 61first strand
Strand 2
H
43 49anti-parallel
Strand 3
H
90 97anti-parallel
Strand 4
H
102 110anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
75 80first strand
Strand 2
I
88 94anti-parallel
Strand 3
I
29 36anti-parallel
Strand 4
I
122 124anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
75 80first strand
Strand 2
I
88 94anti-parallel
Strand 3
I
29 36anti-parallel
Strand 4
I
127 131anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
192 193first strand
Strand 2
I
161 165parallel
Strand 3
I
390 394parallel
Strand 4
I
367 370parallel
Strand 5
I
317 319parallel
Strand 6
I
282 286parallel
Strand 7
I
256 260parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
345 346first strand
Strand 2
I
358 359anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
60 61first strand
Strand 2
J
43 48anti-parallel
Strand 3
J
91 97anti-parallel
Strand 4
J
102 110anti-parallel
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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
75 80first strand
Strand 2
K
89 94anti-parallel
Strand 3
K
30 36anti-parallel
Strand 4
K
122 127anti-parallel
Strand 5
K
299 301parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
229 230first strand
Strand 2
K
191 193parallel
Strand 3
K
161 165parallel
Strand 4
K
390 394parallel
Strand 5
K
367 371parallel
Strand 6
K
317 319parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
232 233first strand
Strand 2
K
256 260parallel
Strand 3
K
282 286parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
345 346first strand
Strand 2
K
358 359anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
60 62first strand
Strand 2
L
43 49anti-parallel
Strand 3
L
90 96anti-parallel
Strand 4
L
103 110anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
75 81first strand
Strand 2
M
89 95anti-parallel
Strand 3
M
28 36anti-parallel
Strand 4
M
122 124anti-parallel
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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
75 81first strand
Strand 2
M
89 95anti-parallel
Strand 3
M
28 36anti-parallel
Strand 4
M
126 131anti-parallel
Strand 5
M
300 301parallel
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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
161 164first strand
Strand 2
M
390 394parallel
Strand 3
M
367 370parallel
Strand 4
M
317 319parallel
Strand 5
M
282 286parallel
Strand 6
M
256 260parallel
Strand 7
M
232 233parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
191 192first strand
Strand 2
M
229 230parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
345 346first strand
Strand 2
M
358 359anti-parallel
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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
60 61first strand
Strand 2
N
43 49anti-parallel
Strand 3
N
90 96anti-parallel
Strand 4
N
103 110anti-parallel
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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
75 78first strand
Strand 2
O
89 95anti-parallel
Strand 3
O
28 36anti-parallel
Strand 4
O
122 129anti-parallel
Strand 5
O
300 301parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
229 230first strand
Strand 2
O
191 193parallel
Strand 3
O
161 165parallel
Strand 4
O
390 394parallel
Strand 5
O
368 371parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
256 260first strand
Strand 2
O
282 286parallel
Strand 3
O
317 318parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
345 346first strand
Strand 2
O
358 359anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
60 61first strand
Strand 2
P
46 49anti-parallel
Strand 3
P
90 97anti-parallel
Strand 4
P
102 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il