Analysis of interatomic Contacts of Structural Units in PDB entry:
8CND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CND entry

There is 1 chain in PDB entry 8CND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1075TRP 1745
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8CND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1086 1103Right-handed alpha
Helix 2
AA2
A
1116 1121Right-handed alpha
Helix 3
AA3
A
1122 1128Right-handed 310
Helix 4
AA4
A
1134 1144Right-handed alpha
Helix 5
AA5
A
1150 1168Right-handed alpha
Helix 6
AA6
A
1172 1196Right-handed alpha
Helix 7
AA7
A
1292 1296Right-handed alpha
Helix 8
AA8
A
1308 1316Right-handed alpha
Helix 9
AA9
A
1332 1350Right-handed alpha
Helix 10
AB1
A
1372 1380Right-handed alpha
Helix 11
AB2
A
1445 1465Right-handed alpha
Helix 12
AB3
A
1495 1513Right-handed alpha
Helix 13
AB4
A
1522 1527Right-handed alpha
Helix 14
AB5
A
1533 1537Right-handed 310
Helix 15
AB6
A
1543 1552Right-handed alpha
Helix 16
AB7
A
1621 1628Right-handed alpha
Helix 17
AB8
A
1657 1661Right-handed 310
Helix 18
AB9
A
1662 1674Right-handed alpha
Helix 19
AC1
A
1679 1697Right-handed alpha
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There are 5 sheets in PDB entry 8CND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1205 1206first strand
Strand 2
A
1276 1277anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1280 1282first strand
Strand 2
A
1289 1291anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1370first strand
Strand 2
A
1388 1402anti-parallel
Strand 3
A
1405 1416anti-parallel
Strand 4
A
1429 1436anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1468 1472first strand
Strand 2
A
1632 1636anti-parallel
Strand 3
A
1518 1521anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1726 1727first strand
Strand 2
A
1716 1719anti-parallel
Strand 3
A
1742 1745anti-parallel
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