Analysis of interatomic Contacts of Structural Units in PDB entry:
8CNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CNI entry

There are 3 chains in PDB entry 8CNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 19LYS 569
A
 GLN 1SER 124
C
 GLN 1SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8CNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
24 29Right-handed alpha
Helix 2
AA2
B
33 39Right-handed alpha
Helix 3
AA3
B
47 52Right-handed alpha
Helix 4
AA4
B
54 59Right-handed alpha
Helix 5
AA5
B
66 84Right-handed alpha
Helix 6
AA6
B
84 95Right-handed alpha
Helix 7
AA7
B
97 114Right-handed alpha
Helix 8
AA8
B
114 121Right-handed alpha
Helix 9
AA9
B
121 130Right-handed alpha
Helix 10
AB1
B
161 190Right-handed alpha
Helix 11
AB2
B
191 194Right-handed 310
Helix 12
AB3
B
195 208Right-handed alpha
Helix 13
AB4
B
210 227Right-handed alpha
Helix 14
AB5
B
234 251Right-handed alpha
Helix 15
AB6
B
252 254Right-handed 310
Helix 16
AB7
B
262 277Right-handed alpha
Helix 17
AB8
B
302 306Right-handed 310
Helix 18
AB9
B
316 335Right-handed alpha
Helix 19
AC1
B
336 356Right-handed alpha
Helix 20
AC2
B
384 393Right-handed alpha
Helix 21
AC3
B
396 403Right-handed alpha
Helix 22
AC4
B
409 439Right-handed alpha
Helix 23
AC5
B
458 462Right-handed 310
Helix 24
AC6
B
463 471Right-handed alpha
Helix 25
AC7
B
471 476Right-handed alpha
Helix 26
AC8
B
476 487Right-handed alpha
Helix 27
AC9
B
494 501Right-handed alpha
Helix 28
AD1
B
504 519Right-handed alpha
Helix 29
AD2
B
539 568Right-handed alpha
Helix 30
AD3
A
87 91Right-handed 310
Helix 31
AD4
A
108 112Right-handed 310
Helix 32
AD5
C
87 91Right-handed 310
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There are 5 sheets in PDB entry 8CNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
443 447first strand
Strand 2
B
450 454anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
119 123parallel
Strand 3
A
92 99anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
59 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 71anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
119 123parallel
Strand 3
C
92 99anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
46 52anti-parallel
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