Analysis of interatomic Contacts of Structural Units in PDB entry:
8CNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CNR entry

There is 1 chain in PDB entry 8CNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8CNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
29 54Right-handed alpha
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
78 99Right-handed alpha
Helix 5
AA5
A
110 114Right-handed 310
Helix 6
AA6
A
119 128Right-handed alpha
Helix 7
AA7
A
129 137Right-handed 310
Helix 8
AA8
A
139 166Right-handed alpha
Helix 9
AA9
A
170 184Right-handed alpha
Helix 10
AB1
A
190 221Right-handed alpha
Helix 11
AB2
A
244 256Right-handed alpha
Helix 12
AB3
A
266 273Right-handed 310
Helix 13
AB4
A
274 279Right-handed alpha
Helix 14
AB5
A
290 292Right-handed 310
Helix 15
AB6
A
293 302Right-handed alpha
Helix 16
AB7
A
316 321Right-handed 310
Helix 17
AB8
A
347 356Right-handed alpha
Helix 18
AB9
A
373 380Right-handed alpha
Helix 19
AC1
A
380 390Right-handed alpha
Helix 20
AC2
A
406 408Right-handed 310
Helix 21
AC3
A
409 419Right-handed alpha
Helix 22
AC4
A
429 435Right-handed 310
Helix 23
AC5
A
454 456Right-handed 310
Helix 24
AC6
A
457 472Right-handed alpha
Helix 25
AC7
A
476 480Right-handed 310
Helix 26
AC8
A
490 503Right-handed alpha
Helix 27
AC9
A
519 531Right-handed alpha
Helix 28
AD1
A
537 546Right-handed alpha
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There are 4 sheets in PDB entry 8CNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
367 370anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
261 264parallel
Strand 3
A
237 241parallel
Strand 4
A
305 307parallel
Strand 5
A
323 325parallel
Strand 6
A
335 336parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 451first strand
Strand 2
A
423 427parallel
Strand 3
A
395 398parallel
Strand 4
A
482 487parallel
Strand 5
A
509 511parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
446 447anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il