Analysis of interatomic Contacts of Structural Units in PDB entry:
8CNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CNT entry

There is 1 chain in PDB entry 8CNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 302GLU 921
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 8CNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
303 307Right-handed 310
Helix 2
AA2
A
308 312Right-handed 310
Helix 3
AA3
A
313 324Right-handed alpha
Helix 4
AA4
A
336 348Right-handed alpha
Helix 5
AA5
A
362 377Right-handed alpha
Helix 6
AA6
A
406 416Right-handed alpha
Helix 7
AA7
A
429 433Right-handed 310
Helix 8
AA8
A
434 451Right-handed alpha
Helix 9
AA9
A
467 472Right-handed alpha
Helix 10
AB1
A
498 514Right-handed alpha
Helix 11
AB2
A
525 543Right-handed alpha
Helix 12
AB3
A
559 568Right-handed alpha
Helix 13
AB4
A
582 587Right-handed alpha
Helix 14
AB5
A
622 632Right-handed alpha
Helix 15
AB6
A
646 653Right-handed alpha
Helix 16
AB7
A
660 664Right-handed 310
Helix 17
AB8
A
667 678Right-handed alpha
Helix 18
AB9
A
681 685Right-handed 310
Helix 19
AC1
A
692 706Right-handed alpha
Helix 20
AC2
A
716 724Right-handed alpha
Helix 21
AC3
A
728 739Right-handed alpha
Helix 22
AC4
A
743 755Right-handed alpha
Helix 23
AC5
A
763 765Right-handed 310
Helix 24
AC6
A
766 778Right-handed alpha
Helix 25
AC7
A
782 797Right-handed alpha
Helix 26
AC8
A
800 807Right-handed alpha
Helix 27
AC9
A
810 831Right-handed alpha
Helix 28
AD1
A
842 853Right-handed alpha
Helix 29
AD2
A
881 886Right-handed 310
Helix 30
AD3
A
913 920Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8CNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
385 389anti-parallel
Strand 3
A
401 405parallel
Strand 4
A
355 360parallel
Strand 5
A
422 427parallel
Strand 6
A
455 460parallel
Strand 7
A
326 330parallel
Strand 8
A
477 479parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 491first strand
Strand 2
A
640 643parallel
Strand 3
A
593 598parallel
Strand 4
A
518 522parallel
Strand 5
A
575 580parallel
Strand 6
A
549 554parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 607first strand
Strand 2
A
614 620anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 862first strand
Strand 2
A
865 868anti-parallel
Strand 3
A
874 877anti-parallel
Strand 4
A
904 911parallel
Strand 5
A
892 900anti-parallel
Strand 6
A
857 862anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il