Analysis of interatomic Contacts of Structural Units in PDB entry:
8COG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8COG entry

There are 2 chains in PDB entry 8COG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ARG 1GLU 71
F
 GLY 73PHE 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8COG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
54 60Right-handed alpha
Helix 2
AA2
F
77 91Right-handed alpha
Helix 3
AA3
F
111 125Right-handed alpha
Helix 4
AA4
F
136 145Right-handed alpha
Helix 5
AA5
F
171 174Right-handed 310
Helix 6
AA6
F
180 193Right-handed alpha
Helix 7
AA7
F
201 216Right-handed alpha
Helix 8
AA8
F
221 232Right-handed alpha
Helix 9
AA9
F
250 255Right-handed 310
Helix 10
AB1
F
256 262Right-handed 310
Helix 11
AB2
F
272 282Right-handed alpha
Helix 12
AB3
F
285 294Right-handed alpha
Helix 13
AB4
F
307 320Right-handed alpha
Helix 14
AB5
F
333 335Right-handed 310
Helix 15
AB6
F
336 348Right-handed alpha
Helix 16
AB7
F
358 365Right-handed alpha
Helix 17
AB8
F
368 373Right-handed alpha
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There are 6 sheets in PDB entry 8COG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
16 17first strand
Strand 2
F
7 11anti-parallel
Strand 3
F
102 106parallel
Strand 4
F
130 135parallel
Strand 5
F
356 357anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
52 53first strand
Strand 2
F
34 37anti-parallel
Strand 3
F
64 67anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
70 71first strand
Strand 2
F
74 75anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
168 169first strand
Strand 2
F
159 165anti-parallel
Strand 3
F
175 177anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
168 169first strand
Strand 2
F
159 165anti-parallel
Strand 3
F
149 154anti-parallel
Strand 4
F
295 299parallel
Strand 5
F
327 328parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
237 240first strand
Strand 2
F
246 249anti-parallel
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