Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CP0 entry

There is 1 chain in PDB entry 8CP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 277ARG 629
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8CP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
281 285Right-handed 310
Helix 2
AA2
A
287 293Right-handed alpha
Helix 3
AA3
A
295 297Right-handed 310
Helix 4
AA4
A
298 306Right-handed alpha
Helix 5
AA5
A
326 330Right-handed 310
Helix 6
AA6
A
333 338Right-handed alpha
Helix 7
AA7
A
371 382Right-handed alpha
Helix 8
AA8
A
412 426Right-handed alpha
Helix 9
AA9
A
441 454Right-handed alpha
Helix 10
AB1
A
475 479Right-handed 310
Helix 11
AB2
A
487 492Right-handed 310
Helix 12
AB3
A
547 550Right-handed 310
Helix 13
AB4
A
551 566Right-handed alpha
Helix 14
AB5
A
570 581Right-handed alpha
Helix 15
AB6
A
585 590Right-handed alpha
Helix 16
AB7
A
599 610Right-handed alpha
Helix 17
AB8
A
618 626Right-handed alpha
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There are 4 sheets in PDB entry 8CP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
398 403parallel
Strand 3
A
311 316parallel
Strand 4
A
430 433parallel
Strand 5
A
457 461parallel
Strand 6
A
497 504parallel
Strand 7
A
512 513anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
398 403parallel
Strand 3
A
311 316parallel
Strand 4
A
430 433parallel
Strand 5
A
457 461parallel
Strand 6
A
497 504parallel
Strand 7
A
526 529parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 537first strand
Strand 2
A
541 545anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 584first strand
Strand 2
A
596 598anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il