Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CP2 entry

There are 2 chains in PDB entry 8CP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2GLN 601
B
 MET 1GLY 600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 8CP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 29Right-handed alpha
Helix 2
AA2
A
64 68Right-handed 310
Helix 3
AA3
A
87 92Right-handed alpha
Helix 4
AA4
A
103 121Right-handed alpha
Helix 5
AA5
A
174 188Right-handed alpha
Helix 6
AA6
A
196 200Right-handed 310
Helix 7
AA7
A
217 227Right-handed alpha
Helix 8
AA8
A
228 232Right-handed 310
Helix 9
AA9
A
283 296Right-handed alpha
Helix 10
AB1
A
301 306Right-handed alpha
Helix 11
AB2
A
306 324Right-handed alpha
Helix 12
AB3
A
327 335Right-handed alpha
Helix 13
AB4
A
340 349Right-handed alpha
Helix 14
AB5
A
352 356Right-handed 310
Helix 15
AB6
A
358 364Right-handed alpha
Helix 16
AB7
A
373 394Right-handed alpha
Helix 17
AB8
A
394 399Right-handed alpha
Helix 18
AB9
A
399 411Right-handed alpha
Helix 19
AC1
A
411 420Right-handed alpha
Helix 20
AC2
A
425 432Right-handed alpha
Helix 21
AC3
A
436 446Right-handed alpha
Helix 22
AC4
A
449 462Right-handed alpha
Helix 23
AC5
A
507 511Right-handed 310
Helix 24
AC6
A
513 522Right-handed alpha
Helix 25
AC7
A
562 566Right-handed 310
Helix 26
AC8
A
582 601Right-handed alpha
Helix 27
AC9
B
11 29Right-handed alpha
Helix 28
AD1
B
47 52Right-handed alpha
Helix 29
AD2
B
64 68Right-handed 310
Helix 30
AD3
B
87 93Right-handed alpha
Helix 31
AD4
B
103 121Right-handed alpha
Helix 32
AD5
B
174 187Right-handed alpha
Helix 33
AD6
B
196 200Right-handed 310
Helix 34
AD7
B
217 227Right-handed alpha
Helix 35
AD8
B
228 232Right-handed 310
Helix 36
AD9
B
283 296Right-handed alpha
Helix 37
AE1
B
301 306Right-handed alpha
Helix 38
AE2
B
306 324Right-handed alpha
Helix 39
AE3
B
327 334Right-handed alpha
Helix 40
AE4
B
339 348Right-handed alpha
Helix 41
AE5
B
352 356Right-handed 310
Helix 42
AE6
B
358 364Right-handed alpha
Helix 43
AE7
B
373 399Right-handed alpha
Helix 44
AE8
B
399 411Right-handed alpha
Helix 45
AE9
B
411 420Right-handed alpha
Helix 46
AF1
B
425 432Right-handed alpha
Helix 47
AF2
B
436 446Right-handed alpha
Helix 48
AF3
B
449 462Right-handed alpha
Helix 49
AF4
B
507 511Right-handed 310
Helix 50
AF5
B
513 522Right-handed alpha
Helix 51
AF6
B
562 566Right-handed 310
Helix 52
AF7
B
582 600Right-handed alpha
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There are 12 sheets in PDB entry 8CP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
35 40parallel
Strand 3
A
3 8parallel
Strand 4
A
155 164parallel
Strand 5
A
146 150anti-parallel
Strand 6
A
135 140anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
35 40parallel
Strand 3
A
3 8parallel
Strand 4
A
155 164parallel
Strand 5
A
554 560parallel
Strand 6
A
546 548anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
497 500parallel
Strand 3
A
210 214parallel
Strand 4
A
252 256parallel
Strand 5
A
465 467parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 238first strand
Strand 2
A
241 245anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 477first strand
Strand 2
A
480 485anti-parallel
Strand 3
A
488 495anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 530first strand
Strand 2
A
533 538anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 131first strand
Strand 2
B
35 40parallel
Strand 3
B
3 8parallel
Strand 4
B
155 164parallel
Strand 5
B
146 150anti-parallel
Strand 6
B
135 140anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 131first strand
Strand 2
B
35 40parallel
Strand 3
B
3 8parallel
Strand 4
B
155 164parallel
Strand 5
B
554 560parallel
Strand 6
B
546 548anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 192first strand
Strand 2
B
497 500parallel
Strand 3
B
210 214parallel
Strand 4
B
252 256parallel
Strand 5
B
465 467parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
234 238first strand
Strand 2
B
241 245anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 477first strand
Strand 2
B
480 484anti-parallel
Strand 3
B
493 495anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 530first strand
Strand 2
B
533 538anti-parallel
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