Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CP4 entry

There are 5 chains in PDB entry 8CP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	GLY 259
B	LYS 6	GLY 259
C	MET 4	GLY 259
D	GLY -1	GLY 259
E	GLY 7	ASN 216

There are 88 helices in PDB entry 8CP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	20	Right-handed alpha
Helix 2	AA2	A	31	45	Right-handed alpha
Helix 3	AA3	A	58	72	Right-handed alpha
Helix 4	AA4	A	85	90	Right-handed alpha
Helix 5	AA5	A	94	115	Right-handed alpha
Helix 6	AA6	A	125	130	Right-handed 310
Helix 7	AA7	A	132	139	Right-handed alpha
Helix 8	AA8	A	145	150	Right-handed alpha
Helix 9	AA9	A	153	164	Right-handed alpha
Helix 10	AB1	A	174	179	Right-handed 310
Helix 11	AB2	A	185	203	Right-handed alpha
Helix 12	AB3	A	226	231	Right-handed 310
Helix 13	AB4	A	232	246	Right-handed alpha
Helix 14	AB5	B	7	20	Right-handed alpha
Helix 15	AB6	B	31	45	Right-handed alpha
Helix 16	AB7	B	58	72	Right-handed alpha
Helix 17	AB8	B	86	90	Right-handed 310
Helix 18	AB9	B	94	115	Right-handed alpha
Helix 19	AC1	B	124	130	Right-handed 310
Helix 20	AC2	B	132	141	Right-handed alpha
Helix 21	AC3	B	145	150	Right-handed alpha
Helix 22	AC4	B	153	164	Right-handed alpha
Helix 23	AC5	B	174	179	Right-handed 310
Helix 24	AC6	B	185	204	Right-handed alpha
Helix 25	AC7	B	224	231	Right-handed 310
Helix 26	AC8	B	232	247	Right-handed alpha
Helix 27	AC9	C	7	20	Right-handed alpha
Helix 28	AD1	C	31	45	Right-handed alpha
Helix 29	AD2	C	58	72	Right-handed alpha
Helix 30	AD3	C	94	115	Right-handed alpha
Helix 31	AD4	C	124	130	Right-handed 310
Helix 32	AD5	C	132	141	Right-handed alpha
Helix 33	AD6	C	145	150	Right-handed alpha
Helix 34	AD7	C	153	164	Right-handed alpha
Helix 35	AD8	C	174	179	Right-handed 310
Helix 36	AD9	C	185	204	Right-handed alpha
Helix 37	AE1	C	225	231	Right-handed 310
Helix 38	AE2	C	232	247	Right-handed alpha
Helix 39	AE3	D	5	20	Right-handed alpha
Helix 40	AE4	D	31	45	Right-handed alpha
Helix 41	AE5	D	58	72	Right-handed alpha
Helix 42	AE6	D	85	91	Right-handed alpha
Helix 43	AE7	D	94	115	Right-handed alpha
Helix 44	AE8	D	125	130	Right-handed 310
Helix 45	AE9	D	132	141	Right-handed alpha
Helix 46	AF1	D	145	150	Right-handed alpha
Helix 47	AF2	D	153	164	Right-handed alpha
Helix 48	AF3	D	174	179	Right-handed 310
Helix 49	AF4	D	185	203	Right-handed alpha
Helix 50	AF5	D	226	231	Right-handed 310
Helix 51	AF6	D	232	246	Right-handed alpha
Helix 52	AF7	E	8	20	Right-handed alpha
Helix 53	AF8	E	31	45	Right-handed alpha
Helix 54	AF9	E	58	72	Right-handed alpha
Helix 55	AG1	E	94	115	Right-handed alpha
Helix 56	AG2	E	124	130	Right-handed 310
Helix 57	AG3	E	132	141	Right-handed alpha
Helix 58	AG4	E	145	150	Right-handed alpha
Helix 59	AG5	E	153	164	Right-handed alpha
Helix 60	AG6	E	174	179	Right-handed 310
Helix 61	AG7	E	185	204	Right-handed alpha
Helix 62	AG8	E	224	231	Right-handed 310
Helix 63	AG9	E	232	247	Right-handed alpha
Helix 64	AH1	F	8	20	Right-handed alpha
Helix 65	AH2	F	31	45	Right-handed alpha
Helix 66	AH3	F	58	72	Right-handed alpha
Helix 67	AH4	F	94	115	Right-handed alpha
Helix 68	AH5	F	124	130	Right-handed 310
Helix 69	AH6	F	134	141	Right-handed alpha
Helix 70	AH7	F	145	150	Right-handed alpha
Helix 71	AH8	F	153	164	Right-handed alpha
Helix 72	AH9	F	174	179	Right-handed 310
Helix 73	AI1	F	185	204	Right-handed alpha
Helix 74	AI2	F	225	231	Right-handed 310
Helix 75	AI3	F	232	246	Right-handed alpha
Helix 76	AI4	G	8	19	Right-handed alpha
Helix 77	AI5	G	31	45	Right-handed alpha
Helix 78	AI6	G	58	72	Right-handed alpha
Helix 79	AI7	G	86	91	Right-handed alpha
Helix 80	AI8	G	94	115	Right-handed alpha
Helix 81	AI9	G	124	130	Right-handed 310
Helix 82	AJ1	G	132	141	Right-handed alpha
Helix 83	AJ2	G	145	150	Right-handed alpha
Helix 84	AJ3	G	153	165	Right-handed alpha
Helix 85	AJ4	G	175	179	Right-handed 310
Helix 86	AJ5	G	185	203	Right-handed alpha
Helix 87	AJ6	G	224	231	Right-handed 310
Helix 88	AJ7	G	232	247	Right-handed alpha

There are 11 sheets in PDB entry 8CP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	46	53	parallel
Strand 3	A	23	27	parallel
Strand 4	A	118	121	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	217	222	anti-parallel
Strand 3	A	250	253	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	47	53	parallel
Strand 3	B	24	27	parallel
Strand 4	B	118	121	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	214	first strand
Strand 2	B	217	221	anti-parallel
Strand 3	B	250	254	parallel
Strand 4	D	250	254	anti-parallel
Strand 5	D	217	222	parallel
Strand 6	D	209	214	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	46	53	parallel
Strand 3	C	23	27	parallel
Strand 4	C	118	121	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	217	222	anti-parallel
Strand 3	C	250	254	parallel
Strand 4	E	250	254	anti-parallel
Strand 5	E	217	222	parallel
Strand 6	E	209	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	80	first strand
Strand 2	D	46	53	parallel
Strand 3	D	23	27	parallel
Strand 4	D	118	121	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	80	first strand
Strand 2	E	46	53	parallel
Strand 3	E	23	27	parallel
Strand 4	E	118	120	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	80	first strand
Strand 2	F	46	53	parallel
Strand 3	F	23	27	parallel
Strand 4	F	118	121	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	214	first strand
Strand 2	F	217	221	anti-parallel
Strand 3	F	250	254	parallel
Strand 4	G	250	254	anti-parallel
Strand 5	G	217	221	parallel
Strand 6	G	210	214	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	80	first strand
Strand 2	G	47	53	parallel
Strand 3	G	24	27	parallel
Strand 4	G	118	120	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP4