Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CP5 entry

There are 2 chains in PDB entry 8CP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLN 601
B	PRO 2	GLY 600

There are 49 helices in PDB entry 8CP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	29	Right-handed alpha
Helix 2	AA2	A	64	68	Right-handed 310
Helix 3	AA3	A	87	92	Right-handed alpha
Helix 4	AA4	A	103	121	Right-handed alpha
Helix 5	AA5	A	174	187	Right-handed alpha
Helix 6	AA6	A	196	200	Right-handed 310
Helix 7	AA7	A	217	227	Right-handed alpha
Helix 8	AA8	A	228	232	Right-handed 310
Helix 9	AA9	A	283	296	Right-handed alpha
Helix 10	AB1	A	301	306	Right-handed alpha
Helix 11	AB2	A	306	324	Right-handed alpha
Helix 12	AB3	A	327	334	Right-handed alpha
Helix 13	AB4	A	340	349	Right-handed alpha
Helix 14	AB5	A	358	364	Right-handed alpha
Helix 15	AB6	A	373	394	Right-handed alpha
Helix 16	AB7	A	399	411	Right-handed alpha
Helix 17	AB8	A	411	420	Right-handed alpha
Helix 18	AB9	A	425	432	Right-handed alpha
Helix 19	AC1	A	436	446	Right-handed alpha
Helix 20	AC2	A	449	462	Right-handed alpha
Helix 21	AC3	A	507	511	Right-handed 310
Helix 22	AC4	A	513	522	Right-handed alpha
Helix 23	AC5	A	562	566	Right-handed 310
Helix 24	AC6	A	582	600	Right-handed alpha
Helix 25	AC7	B	11	29	Right-handed alpha
Helix 26	AC8	B	64	68	Right-handed 310
Helix 27	AC9	B	87	93	Right-handed alpha
Helix 28	AD1	B	103	121	Right-handed alpha
Helix 29	AD2	B	174	188	Right-handed alpha
Helix 30	AD3	B	196	200	Right-handed 310
Helix 31	AD4	B	217	227	Right-handed alpha
Helix 32	AD5	B	228	232	Right-handed 310
Helix 33	AD6	B	283	296	Right-handed alpha
Helix 34	AD7	B	301	306	Right-handed alpha
Helix 35	AD8	B	306	324	Right-handed alpha
Helix 36	AD9	B	327	334	Right-handed alpha
Helix 37	AE1	B	339	349	Right-handed alpha
Helix 38	AE2	B	358	364	Right-handed alpha
Helix 39	AE3	B	373	394	Right-handed alpha
Helix 40	AE4	B	394	399	Right-handed alpha
Helix 41	AE5	B	399	411	Right-handed alpha
Helix 42	AE6	B	411	420	Right-handed alpha
Helix 43	AE7	B	425	432	Right-handed alpha
Helix 44	AE8	B	436	446	Right-handed alpha
Helix 45	AE9	B	449	462	Right-handed alpha
Helix 46	AF1	B	507	511	Right-handed 310
Helix 47	AF2	B	513	522	Right-handed alpha
Helix 48	AF3	B	562	566	Right-handed 310
Helix 49	AF4	B	582	600	Right-handed alpha

There are 12 sheets in PDB entry 8CP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	131	first strand
Strand 2	A	35	40	parallel
Strand 3	A	4	8	parallel
Strand 4	A	161	164	parallel
Strand 5	A	554	560	parallel
Strand 6	A	546	548	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	140	first strand
Strand 2	A	146	150	anti-parallel
Strand 3	A	155	159	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	192	first strand
Strand 2	A	497	500	parallel
Strand 3	A	210	214	parallel
Strand 4	A	252	256	parallel
Strand 5	A	465	467	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	A	241	245	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	477	first strand
Strand 2	A	480	484	anti-parallel
Strand 3	A	493	495	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	530	first strand
Strand 2	A	533	538	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	131	first strand
Strand 2	B	35	40	parallel
Strand 3	B	3	8	parallel
Strand 4	B	155	164	parallel
Strand 5	B	146	150	anti-parallel
Strand 6	B	135	140	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	131	first strand
Strand 2	B	35	40	parallel
Strand 3	B	3	8	parallel
Strand 4	B	155	164	parallel
Strand 5	B	554	560	parallel
Strand 6	B	546	548	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	192	first strand
Strand 2	B	497	500	parallel
Strand 3	B	210	214	parallel
Strand 4	B	252	256	parallel
Strand 5	B	465	467	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	241	245	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	477	first strand
Strand 2	B	480	485	anti-parallel
Strand 3	B	488	495	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	527	530	first strand
Strand 2	B	533	538	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP5