Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CP6 entry

There are 3 chains in PDB entry 8CP6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 30	LYS 47
B	PRO 48	LEU 1168
C	ILE 1169	GLY 1195

There are 11 helices in PDB entry 8CP6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	152	156	Right-handed 310
Helix 2	AA2	B	159	164	Right-handed alpha
Helix 3	AA3	B	207	209	Right-handed 310
Helix 4	AA4	B	360	364	Right-handed 310
Helix 5	AA5	B	403	407	Right-handed 310
Helix 6	AA6	B	1035	1049	Right-handed alpha
Helix 7	AA7	B	1053	1057	Right-handed 310
Helix 8	AA8	B	1143	1147	Right-handed 310
Helix 9	AA9	B	1154	1158	Right-handed 310
Helix 10	AB1	C	1180	1186	Right-handed alpha
Helix 11	AB2	C	1187	1193	Right-handed alpha

There are 8 sheets in PDB entry 8CP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	35	first strand
Strand 2	B	117	121	anti-parallel
Strand 3	B	107	111	anti-parallel
Strand 4	B	100	103	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	75	79	anti-parallel
Strand 3	B	92	93	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	89	90	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	136	140	anti-parallel
Strand 3	B	168	173	anti-parallel
Strand 4	B	176	182	anti-parallel
Strand 5	B	188	195	anti-parallel

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There are 59 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	205	first strand
Strand 2	B	211	215	anti-parallel
Strand 3	B	221	228	anti-parallel
Strand 4	B	239	248	anti-parallel
Strand 5	B	266	272	anti-parallel
Strand 6	B	278	282	anti-parallel
Strand 7	B	288	295	anti-parallel
Strand 8	B	298	303	anti-parallel
Strand 9	B	309	314	anti-parallel
Strand 10	B	323	328	anti-parallel
Strand 11	B	333	338	anti-parallel
Strand 12	B	342	346	anti-parallel
Strand 13	B	352	358	anti-parallel
Strand 14	B	365	370	anti-parallel
Strand 15	B	376	381	anti-parallel
Strand 16	B	387	391	anti-parallel
Strand 17	B	397	401	anti-parallel
Strand 18	B	410	412	anti-parallel
Strand 19	B	418	423	anti-parallel
Strand 20	B	430	434	anti-parallel
Strand 21	B	440	445	anti-parallel
Strand 22	B	451	455	anti-parallel
Strand 23	B	460	464	anti-parallel
Strand 24	B	476	478	anti-parallel
Strand 25	B	484	489	anti-parallel
Strand 26	B	495	499	anti-parallel
Strand 27	B	505	510	anti-parallel
Strand 28	B	516	520	anti-parallel
Strand 29	B	526	531	anti-parallel
Strand 30	B	537	541	anti-parallel
Strand 31	B	547	552	anti-parallel
Strand 32	B	558	563	anti-parallel
Strand 33	B	568	573	anti-parallel
Strand 34	B	579	583	anti-parallel
Strand 35	B	589	594	anti-parallel
Strand 36	B	600	604	anti-parallel
Strand 37	B	610	615	anti-parallel
Strand 38	B	621	625	anti-parallel
Strand 39	B	631	636	anti-parallel
Strand 40	B	642	646	anti-parallel
Strand 41	B	652	657	anti-parallel
Strand 42	B	663	668	anti-parallel
Strand 43	B	677	683	anti-parallel
Strand 44	B	689	693	anti-parallel
Strand 45	B	697	703	anti-parallel
Strand 46	B	709	716	anti-parallel
Strand 47	B	721	728	anti-parallel
Strand 48	B	734	739	anti-parallel
Strand 49	B	745	750	anti-parallel
Strand 50	B	754	760	anti-parallel
Strand 51	B	763	769	anti-parallel
Strand 52	B	775	782	anti-parallel
Strand 53	B	790	796	anti-parallel
Strand 54	B	802	809	anti-parallel
Strand 55	B	814	821	anti-parallel
Strand 56	B	827	832	anti-parallel
Strand 57	B	838	842	anti-parallel
Strand 58	B	848	853	anti-parallel
Strand 59	B	859	860	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	862	863	first strand
Strand 2	B	869	870	anti-parallel

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There are 14 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	919	920	first strand
Strand 2	B	923	927	anti-parallel
Strand 3	B	933	937	anti-parallel
Strand 4	B	943	948	anti-parallel
Strand 5	B	954	960	anti-parallel
Strand 6	B	966	973	anti-parallel
Strand 7	B	979	986	anti-parallel
Strand 8	B	989	998	anti-parallel
Strand 9	B	1001	1006	anti-parallel
Strand 10	B	1010	1016	anti-parallel
Strand 11	B	1023	1030	anti-parallel
Strand 12	B	1064	1070	anti-parallel
Strand 13	B	1076	1080	anti-parallel
Strand 14	B	1086	1089	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1109	1110	first strand
Strand 2	B	1114	1116	anti-parallel
Strand 3	B	1123	1124	anti-parallel
Strand 4	B	1129	1130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CP6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CP6