Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CPB entry

There are 2 chains in PDB entry 8CPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 363
B
 PRO 2ALA 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 8CPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 48Right-handed alpha
Helix 2
AA2
A
54 81Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
102 105Right-handed 310
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
129 135Right-handed alpha
Helix 7
AA7
A
143 152Right-handed alpha
Helix 8
AA8
A
187 199Right-handed alpha
Helix 9
AA9
A
203 205Right-handed 310
Helix 10
AB1
A
206 212Right-handed alpha
Helix 11
AB2
A
215 224Right-handed alpha
Helix 12
AB3
A
225 230Right-handed alpha
Helix 13
AB4
A
242 251Right-handed alpha
Helix 14
AB5
A
257 281Right-handed alpha
Helix 15
AB6
A
291 295Right-handed 310
Helix 16
AB7
A
296 307Right-handed alpha
Helix 17
AB8
A
316 319Right-handed 310
Helix 18
AB9
A
321 323Right-handed 310
Helix 19
AC1
A
324 340Right-handed alpha
Helix 20
AC2
A
345 350Right-handed alpha
Helix 21
AC3
B
38 47Right-handed alpha
Helix 22
AC4
B
54 81Right-handed alpha
Helix 23
AC5
B
84 86Right-handed 310
Helix 24
AC6
B
102 105Right-handed 310
Helix 25
AC7
B
112 121Right-handed alpha
Helix 26
AC8
B
129 135Right-handed alpha
Helix 27
AC9
B
143 152Right-handed alpha
Helix 28
AD1
B
187 199Right-handed alpha
Helix 29
AD2
B
203 205Right-handed 310
Helix 30
AD3
B
206 211Right-handed alpha
Helix 31
AD4
B
215 224Right-handed alpha
Helix 32
AD5
B
225 230Right-handed alpha
Helix 33
AD6
B
242 252Right-handed alpha
Helix 34
AD7
B
257 281Right-handed alpha
Helix 35
AD8
B
291 295Right-handed 310
Helix 36
AD9
B
296 307Right-handed alpha
Helix 37
AE1
B
316 319Right-handed 310
Helix 38
AE2
B
321 323Right-handed 310
Helix 39
AE3
B
324 339Right-handed alpha
Helix 40
AE4
B
345 350Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8CPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 36first strand
Strand 2
A
15 23anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
90 93parallel
Strand 5
A
124 126parallel
Strand 6
A
359 361anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
106 110anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 185first strand
Strand 2
A
166 172anti-parallel
Strand 3
A
158 163anti-parallel
Strand 4
A
286 290parallel
Strand 5
A
311 314parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 36first strand
Strand 2
B
15 23anti-parallel
Strand 3
B
3 8anti-parallel
Strand 4
B
88 93parallel
Strand 5
B
124 126parallel
Strand 6
B
359 361anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 101first strand
Strand 2
B
106 110anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 185first strand
Strand 2
B
166 172anti-parallel
Strand 3
B
158 163anti-parallel
Strand 4
B
286 290parallel
Strand 5
B
311 314parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il