Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CPD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 8CPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 341ALA 620
A
 GLU 622HIS 626
C
 VAL 4ASP 237
B
 ASP 341ALA 620
B
 GLU 622HIS 626
D
 VAL 4ASP 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8CPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 398Right-handed alpha
Helix 2
AA2
A
429 434Right-handed alpha
Helix 3
AA3
A
443 462Right-handed alpha
Helix 4
AA4
A
513 519Right-handed alpha
Helix 5
AA5
A
526 544Right-handed alpha
Helix 6
AA6
A
553 563Right-handed alpha
Helix 7
AA7
A
578 589Right-handed alpha
Helix 8
AA8
A
598 613Right-handed alpha
Helix 9
AA9
C
5 19Right-handed alpha
Helix 10
AB1
C
21 35Right-handed alpha
Helix 11
AB2
C
40 71Right-handed alpha
Helix 12
AB3
C
80 110Right-handed alpha
Helix 13
AB4
C
111 115Right-handed 310
Helix 14
AB5
C
117 137Right-handed alpha
Helix 15
AB6
C
141 165Right-handed alpha
Helix 16
AB7
C
170 187Right-handed alpha
Helix 17
AB8
C
190 208Right-handed alpha
Helix 18
AB9
C
213 236Right-handed alpha
Helix 19
AC1
B
383 399Right-handed alpha
Helix 20
AC2
B
429 434Right-handed alpha
Helix 21
AC3
B
443 462Right-handed alpha
Helix 22
AC4
B
513 519Right-handed alpha
Helix 23
AC5
B
526 544Right-handed alpha
Helix 24
AC6
B
553 563Right-handed alpha
Helix 25
AC7
B
578 589Right-handed alpha
Helix 26
AC8
B
598 613Right-handed alpha
Helix 27
AC9
D
5 19Right-handed alpha
Helix 28
AD1
D
21 36Right-handed alpha
Helix 29
AD2
D
40 71Right-handed alpha
Helix 30
AD3
D
80 110Right-handed alpha
Helix 31
AD4
D
117 137Right-handed alpha
Helix 32
AD5
D
141 165Right-handed alpha
Helix 33
AD6
D
170 187Right-handed alpha
Helix 34
AD7
D
190 208Right-handed alpha
Helix 35
AD8
D
213 236Right-handed alpha
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There are 4 sheets in PDB entry 8CPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 353first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
371 376anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
408 412anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 477first strand
Strand 2
A
481 484anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 353first strand
Strand 2
B
363 367anti-parallel
Strand 3
B
371 376anti-parallel
Strand 4
B
418 422anti-parallel
Strand 5
B
408 412anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 477first strand
Strand 2
B
481 484anti-parallel
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