Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CPL entry

There are 4 chains in PDB entry 8CPL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 9	ASN 460
B	SER 9	GLU 464
C	SER 9	LYS 507
D	SER 9	GLU 464

There are 85 helices in PDB entry 8CPL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	23	Right-handed alpha
Helix 2	AA2	A	27	46	Right-handed alpha
Helix 3	AA3	A	47	54	Right-handed alpha
Helix 4	AA4	A	54	59	Right-handed alpha
Helix 5	AA5	A	100	112	Right-handed alpha
Helix 6	AA6	A	123	137	Right-handed alpha
Helix 7	AA7	A	149	166	Right-handed alpha
Helix 8	AA8	A	184	191	Right-handed alpha
Helix 9	AA9	A	193	198	Right-handed alpha
Helix 10	AB1	A	199	201	Right-handed 310
Helix 11	AB2	A	214	229	Right-handed alpha
Helix 12	AB3	A	252	265	Right-handed alpha
Helix 13	AB4	A	284	288	Right-handed 310
Helix 14	AB5	A	299	304	Right-handed 310
Helix 15	AB6	A	316	320	Right-handed alpha
Helix 16	AB7	A	321	323	Right-handed 310
Helix 17	AB8	A	336	353	Right-handed alpha
Helix 18	AB9	A	354	377	Right-handed alpha
Helix 19	AC1	A	397	411	Right-handed alpha
Helix 20	AC2	A	434	460	Right-handed alpha
Helix 21	AC3	B	10	23	Right-handed alpha
Helix 22	AC4	B	27	46	Right-handed alpha
Helix 23	AC5	B	48	54	Right-handed alpha
Helix 24	AC6	B	54	59	Right-handed alpha
Helix 25	AC7	B	100	112	Right-handed alpha
Helix 26	AC8	B	123	137	Right-handed alpha
Helix 27	AC9	B	149	166	Right-handed alpha
Helix 28	AD1	B	167	169	Right-handed 310
Helix 29	AD2	B	184	191	Right-handed alpha
Helix 30	AD3	B	193	198	Right-handed alpha
Helix 31	AD4	B	199	201	Right-handed 310
Helix 32	AD5	B	214	229	Right-handed alpha
Helix 33	AD6	B	252	265	Right-handed alpha
Helix 34	AD7	B	284	288	Right-handed 310
Helix 35	AD8	B	299	304	Right-handed 310
Helix 36	AD9	B	316	320	Right-handed alpha
Helix 37	AE1	B	321	323	Right-handed 310
Helix 38	AE2	B	336	353	Right-handed alpha
Helix 39	AE3	B	354	377	Right-handed alpha
Helix 40	AE4	B	397	411	Right-handed alpha
Helix 41	AE5	B	434	464	Right-handed alpha
Helix 42	AE6	C	10	23	Right-handed alpha
Helix 43	AE7	C	27	46	Right-handed alpha
Helix 44	AE8	C	48	54	Right-handed alpha
Helix 45	AE9	C	54	59	Right-handed alpha
Helix 46	AF1	C	100	112	Right-handed alpha
Helix 47	AF2	C	123	137	Right-handed alpha
Helix 48	AF3	C	149	166	Right-handed alpha
Helix 49	AF4	C	167	169	Right-handed 310
Helix 50	AF5	C	184	191	Right-handed alpha
Helix 51	AF6	C	193	198	Right-handed alpha
Helix 52	AF7	C	199	201	Right-handed 310
Helix 53	AF8	C	214	229	Right-handed alpha
Helix 54	AF9	C	252	265	Right-handed alpha
Helix 55	AG1	C	284	288	Right-handed 310
Helix 56	AG2	C	299	304	Right-handed 310
Helix 57	AG3	C	316	320	Right-handed alpha
Helix 58	AG4	C	321	323	Right-handed 310
Helix 59	AG5	C	336	353	Right-handed alpha
Helix 60	AG6	C	354	377	Right-handed alpha
Helix 61	AG7	C	397	411	Right-handed alpha
Helix 62	AG8	C	434	466	Right-handed alpha
Helix 63	AG9	C	472	486	Right-handed alpha
Helix 64	AH1	C	489	504	Right-handed alpha
Helix 65	AH2	D	10	23	Right-handed alpha
Helix 66	AH3	D	27	46	Right-handed alpha
Helix 67	AH4	D	48	54	Right-handed alpha
Helix 68	AH5	D	54	59	Right-handed alpha
Helix 69	AH6	D	100	112	Right-handed alpha
Helix 70	AH7	D	123	137	Right-handed alpha
Helix 71	AH8	D	149	166	Right-handed alpha
Helix 72	AH9	D	167	169	Right-handed 310
Helix 73	AI1	D	184	191	Right-handed alpha
Helix 74	AI2	D	193	198	Right-handed alpha
Helix 75	AI3	D	199	201	Right-handed 310
Helix 76	AI4	D	214	229	Right-handed alpha
Helix 77	AI5	D	252	265	Right-handed alpha
Helix 78	AI6	D	284	289	Right-handed 310
Helix 79	AI7	D	299	304	Right-handed 310
Helix 80	AI8	D	316	320	Right-handed alpha
Helix 81	AI9	D	321	323	Right-handed 310
Helix 82	AJ1	D	336	353	Right-handed alpha
Helix 83	AJ2	D	354	377	Right-handed alpha
Helix 84	AJ3	D	397	411	Right-handed alpha
Helix 85	AJ4	D	434	464	Right-handed alpha

There are 12 sheets in PDB entry 8CPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	75	78	anti-parallel
Strand 3	A	83	86	anti-parallel
Strand 4	A	413	414	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	147	first strand
Strand 2	A	310	315	anti-parallel
Strand 3	A	295	298	anti-parallel
Strand 4	A	267	271	parallel
Strand 5	A	232	237	parallel
Strand 6	A	172	176	parallel
Strand 7	A	207	210	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	387	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	424	427	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	75	78	anti-parallel
Strand 3	B	83	86	anti-parallel
Strand 4	B	413	414	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	147	first strand
Strand 2	B	310	315	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	267	271	parallel
Strand 5	B	232	237	parallel
Strand 6	B	172	176	parallel
Strand 7	B	207	210	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	387	first strand
Strand 2	B	390	395	anti-parallel
Strand 3	B	424	427	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	75	78	anti-parallel
Strand 3	C	83	86	anti-parallel
Strand 4	C	413	414	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	147	first strand
Strand 2	C	310	315	anti-parallel
Strand 3	C	295	298	anti-parallel
Strand 4	C	267	271	parallel
Strand 5	C	232	237	parallel
Strand 6	C	172	176	parallel
Strand 7	C	207	210	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	387	first strand
Strand 2	C	390	395	anti-parallel
Strand 3	C	424	427	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	70	first strand
Strand 2	D	75	78	anti-parallel
Strand 3	D	83	86	anti-parallel
Strand 4	D	413	414	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	147	first strand
Strand 2	D	310	315	anti-parallel
Strand 3	D	295	298	anti-parallel
Strand 4	D	267	271	parallel
Strand 5	D	232	237	parallel
Strand 6	D	172	176	parallel
Strand 7	D	207	210	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	387	first strand
Strand 2	D	390	395	anti-parallel
Strand 3	D	424	427	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CPL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPL