Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CPS entry

There are 48 chains in PDB entry 8CPS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	SER 4	ASP 89
1	ASP 91	GLY 176
2	SER 4	ASP 89
2	ASP 91	GLY 176
4	SER 4	ASP 89
4	ASP 91	GLY 176
6	SER 4	ASP 89
6	ASP 91	GLY 176
A	SER 4	ASP 89
A	ASP 91	GLY 176
B	SER 4	ASP 89
B	ASP 91	GLY 176
E	SER 4	ASP 89
E	ASP 91	GLY 176
F	SER 4	ASP 89
F	ASP 91	GLY 176
G	SER 4	ASP 89
G	ASP 91	GLY 176
H	SER 4	ASP 89
H	ASP 91	GLY 176
I	SER 4	ASP 89
I	ASP 91	GLY 176
K	SER 4	ASP 89
K	ASP 91	GLY 176
M	SER 4	ASP 89
M	ASP 91	GLY 176
O	SER 4	ASP 89
O	ASP 91	GLY 176
P	SER 4	ASP 89
P	ASP 91	GLY 176
Q	SER 4	ASP 89
Q	ASP 91	GLY 176
S	SER 4	ASP 89
S	ASP 91	GLY 176
U	SER 4	ASP 89
U	ASP 91	GLY 176
W	SER 4	ASP 89
W	ASP 91	GLY 176
X	SER 4	ASP 89
X	ASP 91	GLY 176
Y	SER 4	ASP 89
Y	ASP 91	GLY 176
a	SER 4	ASP 89
a	ASP 91	GLY 176
e	SER 4	ASP 89
e	ASP 91	GLY 176
r	SER 4	ASP 89
r	ASP 91	GLY 176

There are144 helices in PDB entry 8CPS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	13	42	Right-handed alpha
Helix 2	AA2	1	48	77	Right-handed alpha
Helix 3	AA3	1	95	124	Right-handed alpha
Helix 4	AA4	1	126	137	Right-handed alpha
Helix 5	AA5	1	137	159	Right-handed alpha
Helix 6	AA6	1	163	174	Right-handed alpha
Helix 7	AA7	2	13	42	Right-handed alpha
Helix 8	AA8	2	48	77	Right-handed alpha
Helix 9	AA9	2	95	124	Right-handed alpha
Helix 10	AB1	2	126	137	Right-handed alpha
Helix 11	AB2	2	137	159	Right-handed alpha
Helix 12	AB3	2	163	174	Right-handed alpha
Helix 13	AB4	4	13	42	Right-handed alpha
Helix 14	AB5	4	48	77	Right-handed alpha
Helix 15	AB6	4	95	124	Right-handed alpha
Helix 16	AB7	4	126	137	Right-handed alpha
Helix 17	AB8	4	137	159	Right-handed alpha
Helix 18	AB9	4	163	174	Right-handed alpha
Helix 19	AC1	6	13	42	Right-handed alpha
Helix 20	AC2	6	48	76	Right-handed alpha
Helix 21	AC3	6	95	124	Right-handed alpha
Helix 22	AC4	6	126	137	Right-handed alpha
Helix 23	AC5	6	137	159	Right-handed alpha
Helix 24	AC6	6	163	174	Right-handed alpha
Helix 25	AC7	A	13	42	Right-handed alpha
Helix 26	AC8	A	48	77	Right-handed alpha
Helix 27	AC9	A	95	124	Right-handed alpha
Helix 28	AD1	A	126	137	Right-handed alpha
Helix 29	AD2	A	137	159	Right-handed alpha
Helix 30	AD3	A	163	174	Right-handed alpha
Helix 31	AD4	B	13	42	Right-handed alpha
Helix 32	AD5	B	48	77	Right-handed alpha
Helix 33	AD6	B	95	124	Right-handed alpha
Helix 34	AD7	B	126	137	Right-handed alpha
Helix 35	AD8	B	137	159	Right-handed alpha
Helix 36	AD9	B	163	174	Right-handed alpha
Helix 37	AE1	E	13	42	Right-handed alpha
Helix 38	AE2	E	48	77	Right-handed alpha
Helix 39	AE3	E	95	124	Right-handed alpha
Helix 40	AE4	E	126	137	Right-handed alpha
Helix 41	AE5	E	137	159	Right-handed alpha
Helix 42	AE6	E	163	174	Right-handed alpha
Helix 43	AE7	F	13	42	Right-handed alpha
Helix 44	AE8	F	48	77	Right-handed alpha
Helix 45	AE9	F	95	124	Right-handed alpha
Helix 46	AF1	F	126	137	Right-handed alpha
Helix 47	AF2	F	137	159	Right-handed alpha
Helix 48	AF3	F	163	174	Right-handed alpha
Helix 49	AF4	G	13	42	Right-handed alpha
Helix 50	AF5	G	48	76	Right-handed alpha
Helix 51	AF6	G	95	124	Right-handed alpha
Helix 52	AF7	G	126	137	Right-handed alpha
Helix 53	AF8	G	137	159	Right-handed alpha
Helix 54	AF9	G	163	174	Right-handed alpha
Helix 55	AG1	H	13	42	Right-handed alpha
Helix 56	AG2	H	48	77	Right-handed alpha
Helix 57	AG3	H	95	124	Right-handed alpha
Helix 58	AG4	H	126	137	Right-handed alpha
Helix 59	AG5	H	137	159	Right-handed alpha
Helix 60	AG6	H	163	174	Right-handed alpha
Helix 61	AG7	I	13	42	Right-handed alpha
Helix 62	AG8	I	48	77	Right-handed alpha
Helix 63	AG9	I	95	124	Right-handed alpha
Helix 64	AH1	I	126	137	Right-handed alpha
Helix 65	AH2	I	137	159	Right-handed alpha
Helix 66	AH3	I	163	174	Right-handed alpha
Helix 67	AH4	K	13	42	Right-handed alpha
Helix 68	AH5	K	48	77	Right-handed alpha
Helix 69	AH6	K	95	124	Right-handed alpha
Helix 70	AH7	K	126	137	Right-handed alpha
Helix 71	AH8	K	137	159	Right-handed alpha
Helix 72	AH9	K	163	174	Right-handed alpha
Helix 73	AI1	M	13	42	Right-handed alpha
Helix 74	AI2	M	48	76	Right-handed alpha
Helix 75	AI3	M	95	124	Right-handed alpha
Helix 76	AI4	M	126	137	Right-handed alpha
Helix 77	AI5	M	137	159	Right-handed alpha
Helix 78	AI6	M	163	174	Right-handed alpha
Helix 79	AI7	O	13	42	Right-handed alpha
Helix 80	AI8	O	48	77	Right-handed alpha
Helix 81	AI9	O	95	124	Right-handed alpha
Helix 82	AJ1	O	126	137	Right-handed alpha
Helix 83	AJ2	O	137	159	Right-handed alpha
Helix 84	AJ3	O	163	174	Right-handed alpha
Helix 85	AJ4	P	13	42	Right-handed alpha
Helix 86	AJ5	P	48	77	Right-handed alpha
Helix 87	AJ6	P	95	124	Right-handed alpha
Helix 88	AJ7	P	126	137	Right-handed alpha
Helix 89	AJ8	P	137	159	Right-handed alpha
Helix 90	AJ9	P	163	174	Right-handed alpha
Helix 91	AK1	Q	13	42	Right-handed alpha
Helix 92	AK2	Q	48	76	Right-handed alpha
Helix 93	AK3	Q	95	124	Right-handed alpha
Helix 94	AK4	Q	126	137	Right-handed alpha
Helix 95	AK5	Q	137	159	Right-handed alpha
Helix 96	AK6	Q	163	174	Right-handed alpha
Helix 97	AK7	S	13	42	Right-handed alpha
Helix 98	AK8	S	48	77	Right-handed alpha
Helix 99	AK9	S	95	124	Right-handed alpha
Helix 100	AL1	S	126	137	Right-handed alpha
Helix 101	AL2	S	137	159	Right-handed alpha
Helix 102	AL3	S	163	174	Right-handed alpha
Helix 103	AL4	U	13	42	Right-handed alpha
Helix 104	AL5	U	48	77	Right-handed alpha
Helix 105	AL6	U	95	124	Right-handed alpha
Helix 106	AL7	U	126	137	Right-handed alpha
Helix 107	AL8	U	137	159	Right-handed alpha
Helix 108	AL9	U	163	174	Right-handed alpha
Helix 109	AM1	W	13	42	Right-handed alpha
Helix 110	AM2	W	48	76	Right-handed alpha
Helix 111	AM3	W	95	124	Right-handed alpha
Helix 112	AM4	W	126	137	Right-handed alpha
Helix 113	AM5	W	137	159	Right-handed alpha
Helix 114	AM6	W	163	174	Right-handed alpha
Helix 115	AM7	X	13	42	Right-handed alpha
Helix 116	AM8	X	48	77	Right-handed alpha
Helix 117	AM9	X	95	124	Right-handed alpha
Helix 118	AN1	X	126	137	Right-handed alpha
Helix 119	AN2	X	137	159	Right-handed alpha
Helix 120	AN3	X	163	174	Right-handed alpha
Helix 121	AN4	Y	13	42	Right-handed alpha
Helix 122	AN5	Y	48	77	Right-handed alpha
Helix 123	AN6	Y	95	124	Right-handed alpha
Helix 124	AN7	Y	126	137	Right-handed alpha
Helix 125	AN8	Y	137	159	Right-handed alpha
Helix 126	AN9	Y	163	174	Right-handed alpha
Helix 127	AO1	a	13	42	Right-handed alpha
Helix 128	AO2	a	48	76	Right-handed alpha
Helix 129	AO3	a	95	124	Right-handed alpha
Helix 130	AO4	a	126	137	Right-handed alpha
Helix 131	AO5	a	137	159	Right-handed alpha
Helix 132	AO6	a	163	174	Right-handed alpha
Helix 133	AO7	e	13	42	Right-handed alpha
Helix 134	AO8	e	48	77	Right-handed alpha
Helix 135	AO9	e	95	124	Right-handed alpha
Helix 136	AP1	e	126	137	Right-handed alpha
Helix 137	AP2	e	137	159	Right-handed alpha
Helix 138	AP3	e	163	174	Right-handed alpha
Helix 139	AP4	r	13	42	Right-handed alpha
Helix 140	AP5	r	48	77	Right-handed alpha
Helix 141	AP6	r	95	124	Right-handed alpha
Helix 142	AP7	r	126	137	Right-handed alpha
Helix 143	AP8	r	137	159	Right-handed alpha
Helix 144	AP9	r	163	174	Right-handed alpha

There are no sheets in PDB entry 8CPS

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CPS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPS