Analysis of interatomic Contacts of Structural Units in PDB entry:
8CPY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CPY entry

There are 3 chains in PDB entry 8CPY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ALA 43VAL 189
D
 GLY 41PRO 188
I
 LYS 42THR 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8CPY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
75 79Right-handed 310
Helix 2
AA2
C
80 85Right-handed alpha
Helix 3
AA3
C
116 122Right-handed 310
Helix 4
AA4
C
146 153Right-handed alpha
Helix 5
AA5
D
75 79Right-handed 310
Helix 6
AA6
D
80 85Right-handed alpha
Helix 7
AA7
D
118 123Right-handed alpha
Helix 8
AA8
D
146 153Right-handed alpha
Helix 9
AA9
I
80 85Right-handed alpha
Helix 10
AB1
I
117 123Right-handed alpha
Helix 11
AB2
I
146 153Right-handed alpha
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There are 7 sheets in PDB entry 8CPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 58first strand
Strand 2
C
169 178anti-parallel
Strand 3
C
88 97anti-parallel
Strand 4
C
135 138anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 70first strand
Strand 2
C
154 160anti-parallel
Strand 3
C
105 111anti-parallel
Strand 4
C
127 128anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 55first strand
Strand 2
D
169 178anti-parallel
Strand 3
D
88 97anti-parallel
Strand 4
D
135 138anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 70first strand
Strand 2
D
154 160anti-parallel
Strand 3
D
105 111anti-parallel
Strand 4
D
127 128anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
50 54first strand
Strand 2
I
169 178anti-parallel
Strand 3
I
57 58anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
50 54first strand
Strand 2
I
169 178anti-parallel
Strand 3
I
88 97anti-parallel
Strand 4
I
135 137anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
67 70first strand
Strand 2
I
154 160anti-parallel
Strand 3
I
105 111anti-parallel
Strand 4
I
127 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il