Analysis of interatomic Contacts of Structural Units in PDB entry:
8CQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CQB entry

There are 2 chains in PDB entry 8CQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6THR 483
B
 HIS 6THR 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8CQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 33Right-handed alpha
Helix 2
AA2
A
50 60Right-handed alpha
Helix 3
AA3
A
108 123Right-handed alpha
Helix 4
AA4
A
135 154Right-handed alpha
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
197 206Right-handed alpha
Helix 7
AA7
A
213 230Right-handed alpha
Helix 8
AA8
A
249 253Right-handed 310
Helix 9
AA9
A
259 277Right-handed alpha
Helix 10
AB1
A
289 305Right-handed alpha
Helix 11
AB2
A
315 322Right-handed alpha
Helix 12
AB3
A
323 342Right-handed alpha
Helix 13
AB4
A
350 372Right-handed alpha
Helix 14
AB5
A
375 377Right-handed 310
Helix 15
AB6
A
378 424Right-handed alpha
Helix 16
AB7
A
432 450Right-handed alpha
Helix 17
AB8
A
457 468Right-handed alpha
Helix 18
AB9
A
469 483Right-handed alpha
Helix 19
AC1
B
24 32Right-handed alpha
Helix 20
AC2
B
50 60Right-handed alpha
Helix 21
AC3
B
108 123Right-handed alpha
Helix 22
AC4
B
135 155Right-handed alpha
Helix 23
AC5
B
170 174Right-handed 310
Helix 24
AC6
B
197 206Right-handed alpha
Helix 25
AC7
B
213 230Right-handed alpha
Helix 26
AC8
B
259 277Right-handed alpha
Helix 27
AC9
B
289 305Right-handed alpha
Helix 28
AD1
B
316 341Right-handed alpha
Helix 29
AD2
B
349 372Right-handed alpha
Helix 30
AD3
B
375 377Right-handed 310
Helix 31
AD4
B
378 415Right-handed alpha
Helix 32
AD5
B
415 420Right-handed alpha
Helix 33
AD6
B
425 429Right-handed 310
Helix 34
AD7
B
431 448Right-handed alpha
Helix 35
AD8
B
454 456Right-handed 310
Helix 36
AD9
B
457 473Right-handed alpha
Helix 37
AE1
B
478 483Right-handed alpha
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There are 5 sheets in PDB entry 8CQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
92 98anti-parallel
Strand 5
A
38 45parallel
Strand 6
A
125 131parallel
Strand 7
A
177 183parallel
Strand 8
A
233 237parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
194 195anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
92 98anti-parallel
Strand 5
B
38 41parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
125 131parallel
Strand 3
B
177 183parallel
Strand 4
B
235 237parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
194 195anti-parallel
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