Analysis of interatomic Contacts of Structural Units in PDB entry:
8CQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CQD entry

There are 6 chains in PDB entry 8CQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 250
B
 ASP 23ALA 250
C
 ASP 23ALA 250
E
 ASP 23ALA 250
F
 ASP 23ALA 250
D
 MET 1ALA 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 8CQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 14Right-handed alpha
Helix 2
AA2
A
15 17Right-handed 310
Helix 3
AA3
A
28 51Right-handed alpha
Helix 4
AA4
A
52 54Right-handed 310
Helix 5
AA5
A
56 59Right-handed 310
Helix 6
AA6
A
60 87Right-handed alpha
Helix 7
AA7
A
91 118Right-handed alpha
Helix 8
AA8
A
122 144Right-handed alpha
Helix 9
AA9
A
148 170Right-handed alpha
Helix 10
AB1
A
170 178Right-handed alpha
Helix 11
AB2
A
180 197Right-handed alpha
Helix 12
AB3
A
199 209Right-handed alpha
Helix 13
AB4
A
220 248Right-handed alpha
Helix 14
AB5
B
29 51Right-handed alpha
Helix 15
AB6
B
52 54Right-handed 310
Helix 16
AB7
B
61 87Right-handed alpha
Helix 17
AB8
B
91 118Right-handed alpha
Helix 18
AB9
B
122 144Right-handed alpha
Helix 19
AC1
B
148 169Right-handed alpha
Helix 20
AC2
B
170 178Right-handed alpha
Helix 21
AC3
B
180 197Right-handed alpha
Helix 22
AC4
B
199 209Right-handed alpha
Helix 23
AC5
B
220 248Right-handed alpha
Helix 24
AC6
C
28 51Right-handed alpha
Helix 25
AC7
C
52 54Right-handed 310
Helix 26
AC8
C
61 87Right-handed alpha
Helix 27
AC9
C
91 118Right-handed alpha
Helix 28
AD1
C
122 145Right-handed alpha
Helix 29
AD2
C
148 169Right-handed alpha
Helix 30
AD3
C
170 178Right-handed alpha
Helix 31
AD4
C
180 197Right-handed alpha
Helix 32
AD5
C
199 209Right-handed alpha
Helix 33
AD6
C
220 250Right-handed alpha
Helix 34
AD7
E
29 51Right-handed alpha
Helix 35
AD8
E
52 54Right-handed 310
Helix 36
AD9
E
61 87Right-handed alpha
Helix 37
AE1
E
91 118Right-handed alpha
Helix 38
AE2
E
122 144Right-handed alpha
Helix 39
AE3
E
148 169Right-handed alpha
Helix 40
AE4
E
170 178Right-handed alpha
Helix 41
AE5
E
180 197Right-handed alpha
Helix 42
AE6
E
199 209Right-handed alpha
Helix 43
AE7
E
220 248Right-handed alpha
Helix 44
AE8
F
28 51Right-handed alpha
Helix 45
AE9
F
59 87Right-handed alpha
Helix 46
AF1
F
91 118Right-handed alpha
Helix 47
AF2
F
122 145Right-handed alpha
Helix 48
AF3
F
148 169Right-handed alpha
Helix 49
AF4
F
170 178Right-handed alpha
Helix 50
AF5
F
180 197Right-handed alpha
Helix 51
AF6
F
199 209Right-handed alpha
Helix 52
AF7
F
220 249Right-handed alpha
Helix 53
AF8
D
2 18Right-handed alpha
Helix 54
AF9
D
28 51Right-handed alpha
Helix 55
AG1
D
52 54Right-handed 310
Helix 56
AG2
D
60 87Right-handed alpha
Helix 57
AG3
D
91 118Right-handed alpha
Helix 58
AG4
D
122 144Right-handed alpha
Helix 59
AG5
D
148 170Right-handed alpha
Helix 60
AG6
D
170 178Right-handed alpha
Helix 61
AG7
D
180 197Right-handed alpha
Helix 62
AG8
D
199 209Right-handed alpha
Helix 63
AG9
D
220 248Right-handed alpha
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There are no sheets in PDB entry 8CQD
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