Analysis of interatomic Contacts of Structural Units in PDB entry:
8CQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CQF entry

There is 1 chain in PDB entry 8CQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 1ALA 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8CQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
23 28Right-handed alpha
Helix 3
AA3
A
45 51Right-handed 310
Helix 4
AA4
A
63 77Right-handed alpha
Helix 5
AA5
A
112 116Right-handed 310
Helix 6
AA6
A
123 130Right-handed alpha
Helix 7
AA7
A
130 137Right-handed alpha
Helix 8
AA8
A
149 166Right-handed alpha
Helix 9
AA9
A
175 179Right-handed 310
Helix 10
AB1
A
180 190Right-handed alpha
Helix 11
AB2
A
210 218Right-handed 310
Helix 12
AB3
A
222 236Right-handed alpha
Helix 13
AB4
A
237 244Right-handed 310
Helix 14
AB5
A
245 249Right-handed 310
Helix 15
AB6
A
252 254Right-handed 310
Helix 16
AB7
A
278 281Right-handed 310
Helix 17
AB8
A
282 295Right-handed alpha
Helix 18
AB9
A
336 339Right-handed 310
Helix 19
AC1
A
340 353Right-handed alpha
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There are 7 sheets in PDB entry 8CQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
31 34parallel
Strand 3
A
80 86parallel
Strand 4
A
170 174parallel
Strand 5
A
196 199parallel
Strand 6
A
219 221parallel
Strand 7
A
256 258parallel
Strand 8
A
299 304parallel
Strand 9
A
5 8parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
143 144anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
102 103anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
326 327anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
369 373anti-parallel
Strand 3
A
378 383anti-parallel
Strand 4
A
438 443anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
429 431anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 403first strand
Strand 2
A
421 424anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il