Analysis of interatomic Contacts of Structural Units in PDB entry:
8CQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CQM entry

There are 2 chains in PDB entry 8CQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 1GLU 238
B
 TRP 1GLU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8CQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 28Right-handed alpha
Helix 2
AA2
A
30 43Right-handed alpha
Helix 3
AA3
A
43 56Right-handed alpha
Helix 4
AA4
A
63 68Right-handed alpha
Helix 5
AA5
A
85 103Right-handed alpha
Helix 6
AA6
A
105 123Right-handed alpha
Helix 7
AA7
A
124 130Right-handed 310
Helix 8
AA8
A
140 153Right-handed alpha
Helix 9
AA9
A
154 157Right-handed 310
Helix 10
AB1
A
171 186Right-handed alpha
Helix 11
AB2
A
186 191Right-handed alpha
Helix 12
AB3
A
192 202Right-handed alpha
Helix 13
AB4
A
204 238Right-handed alpha
Helix 14
AB5
B
12 28Right-handed alpha
Helix 15
AB6
B
30 43Right-handed alpha
Helix 16
AB7
B
43 57Right-handed alpha
Helix 17
AB8
B
58 61Right-handed 310
Helix 18
AB9
B
62 68Right-handed alpha
Helix 19
AC1
B
85 103Right-handed alpha
Helix 20
AC2
B
105 123Right-handed alpha
Helix 21
AC3
B
124 130Right-handed 310
Helix 22
AC4
B
140 153Right-handed alpha
Helix 23
AC5
B
154 157Right-handed 310
Helix 24
AC6
B
171 186Right-handed alpha
Helix 25
AC7
B
186 191Right-handed alpha
Helix 26
AC8
B
192 202Right-handed alpha
Helix 27
AC9
B
204 238Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8CQM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il