Analysis of interatomic Contacts of Structural Units in PDB entry:
8CQZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CQZ entry

There are 2 chains in PDB entry 8CQZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 7ALA 347
B
 LEU 39HIS 104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8CQZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 34Right-handed alpha
Helix 2
AA2
A
47 65Right-handed alpha
Helix 3
AA3
A
77 83Right-handed alpha
Helix 4
AA4
A
123 138Right-handed alpha
Helix 5
AA5
A
139 159Right-handed alpha
Helix 6
AA6
A
171 178Right-handed alpha
Helix 7
AA7
A
178 186Right-handed alpha
Helix 8
AA8
A
186 210Right-handed alpha
Helix 9
AA9
A
212 217Right-handed 310
Helix 10
AB1
A
224 237Right-handed alpha
Helix 11
AB2
A
251 268Right-handed alpha
Helix 12
AB3
A
289 310Right-handed alpha
Helix 13
AB4
A
327 338Right-handed alpha
Helix 14
AB5
B
40 61Right-handed alpha
Helix 15
AB6
B
68 102Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8CQZ.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
101 104anti-parallel
Strand 3
A
68 72parallel
Strand 4
A
162 166parallel
Strand 5
A
39 43parallel
Strand 6
A
242 248parallel
Strand 7
A
272 280parallel
Strand 8
A
314 319parallel
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