Analysis of interatomic Contacts of Structural Units in PDB entry:
8CRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CRB entry

There are 3 chains in PDB entry 8CRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1PRO 227
B
 GLN 1SER 216
C
 LYS 127THR 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8CRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
74 76Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
A
141 146Right-handed 310
Helix 4
AA4
A
201 203Right-handed 310
Helix 5
AA5
B
28 32Right-handed 310
Helix 6
AA6
B
80 84Right-handed 310
Helix 7
AA7
B
125 130Right-handed alpha
Helix 8
AA8
B
185 192Right-handed alpha
Helix 9
AA9
B
211 215Right-handed 310
Helix 10
AB1
C
129 158Right-handed alpha
Helix 11
AB2
C
173 177Right-handed 310
Helix 12
AB3
C
189 198Right-handed alpha
Helix 13
AB4
C
206 212Right-handed alpha
Helix 14
AB5
C
236 264Right-handed alpha
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There are 11 sheets in PDB entry 8CRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
78 84anti-parallel
Strand 4
A
68 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
121 125parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 49anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
121 125parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
116 117anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 137first strand
Strand 2
A
149 159anti-parallel
Strand 3
A
190 199anti-parallel
Strand 4
A
183 184anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 168first strand
Strand 2
A
209 214anti-parallel
Strand 3
A
220 224anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
106 109parallel
Strand 3
B
85 88anti-parallel
Strand 4
B
37 39anti-parallel
Strand 5
B
46 47anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 23first strand
Strand 2
B
71 76anti-parallel
Strand 3
B
63 68anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
135 143anti-parallel
Strand 3
B
176 183anti-parallel
Strand 4
B
163 165anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
135 143anti-parallel
Strand 3
B
176 183anti-parallel
Strand 4
B
169 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 158first strand
Strand 2
B
149 154anti-parallel
Strand 3
B
195 200anti-parallel
Strand 4
B
206 209anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
227 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il