Analysis of interatomic Contacts of Structural Units in PDB entry:
8CRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CRJ entry

There is 1 chain in PDB entry 8CRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3TYR 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8CRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
49 53Right-handed 310
Helix 3
AA3
A
55 63Right-handed alpha
Helix 4
AA4
A
99 112Right-handed alpha
Helix 5
AA5
A
155 163Right-handed alpha
Helix 6
AA6
A
184 189Right-handed 310
Helix 7
AA7
A
194 207Right-handed alpha
Helix 8
AA8
A
211 215Right-handed 310
Helix 9
AA9
A
221 235Right-handed alpha
Helix 10
AB1
A
238 243Right-handed alpha
Helix 11
AB2
A
288 296Right-handed alpha
Helix 12
AB3
A
301 309Right-handed alpha
Helix 13
AB4
A
314 319Right-handed alpha
Helix 14
AB5
A
322 331Right-handed alpha
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There are 3 sheets in PDB entry 8CRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
32 37parallel
Strand 3
A
82 90anti-parallel
Strand 4
A
143 151anti-parallel
Strand 5
A
130 140anti-parallel
Strand 6
A
124 127anti-parallel
Strand 7
A
118 120anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
41 44parallel
Strand 3
A
76 78anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
249 257anti-parallel
Strand 3
A
260 269anti-parallel
Strand 4
A
272 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il