Analysis of interatomic Contacts of Structural Units in PDB entry:
8CSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CSE entry

There are 4 chains in PDB entry 8CSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1HIS 27
A
 ALA 29HIS 405
B
 GLY 1HIS 27
B
 ALA 29HIS 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8CSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
39 44Right-handed alpha
Helix 3
AA3
A
45 51Right-handed 310
Helix 4
AA4
A
53 56Right-handed 310
Helix 5
AA5
A
57 65Right-handed alpha
Helix 6
AA6
A
70 76Right-handed alpha
Helix 7
AA7
A
83 93Right-handed alpha
Helix 8
AA8
A
97 108Right-handed alpha
Helix 9
AA9
A
110 123Right-handed alpha
Helix 10
AB1
A
140 151Right-handed alpha
Helix 11
AB2
A
183 192Right-handed alpha
Helix 12
AB3
A
200 209Right-handed alpha
Helix 13
AB4
A
232 237Right-handed alpha
Helix 14
AB5
A
243 253Right-handed alpha
Helix 15
AB6
A
256 258Right-handed 310
Helix 16
AB7
A
284 291Right-handed alpha
Helix 17
AB8
A
300 309Right-handed alpha
Helix 18
AB9
A
321 327Right-handed alpha
Helix 19
AC1
A
329 343Right-handed alpha
Helix 20
AC2
A
349 352Right-handed 310
Helix 21
AC3
A
353 362Right-handed alpha
Helix 22
AC4
A
365 378Right-handed alpha
Helix 23
AC5
A
391 405Right-handed alpha
Helix 24
AC6
B
18 29Right-handed alpha
Helix 25
AC7
B
39 44Right-handed alpha
Helix 26
AC8
B
45 51Right-handed 310
Helix 27
AC9
B
53 56Right-handed 310
Helix 28
AD1
B
57 65Right-handed alpha
Helix 29
AD2
B
70 75Right-handed alpha
Helix 30
AD3
B
84 93Right-handed alpha
Helix 31
AD4
B
97 108Right-handed alpha
Helix 32
AD5
B
110 124Right-handed alpha
Helix 33
AD6
B
126 131Right-handed alpha
Helix 34
AD7
B
140 151Right-handed alpha
Helix 35
AD8
B
183 192Right-handed alpha
Helix 36
AD9
B
200 209Right-handed alpha
Helix 37
AE1
B
232 237Right-handed alpha
Helix 38
AE2
B
243 253Right-handed alpha
Helix 39
AE3
B
256 258Right-handed 310
Helix 40
AE4
B
284 291Right-handed alpha
Helix 41
AE5
B
300 309Right-handed alpha
Helix 42
AE6
B
321 326Right-handed alpha
Helix 43
AE7
B
329 343Right-handed alpha
Helix 44
AE8
B
349 352Right-handed 310
Helix 45
AE9
B
353 362Right-handed alpha
Helix 46
AF1
B
365 379Right-handed alpha
Helix 47
AF2
B
391 403Right-handed alpha
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There are 4 sheets in PDB entry 8CSE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
34 38parallel
Strand 3
A
2 5parallel
Strand 4
A
133 136parallel
Strand 5
A
154 159parallel
Strand 6
A
170 174anti-parallel
Strand 7
A
346 347anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
260 263parallel
Strand 3
A
221 226parallel
Strand 4
A
292 297parallel
Strand 5
A
312 315parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
34 37parallel
Strand 3
B
2 5parallel
Strand 4
B
133 136parallel
Strand 5
B
154 159parallel
Strand 6
B
170 174anti-parallel
Strand 7
B
346 347anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 279first strand
Strand 2
B
260 263parallel
Strand 3
B
221 226parallel
Strand 4
B
292 297parallel
Strand 5
B
312 315parallel
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