Analysis of interatomic Contacts of Structural Units in PDB entry:
8CSO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CSO entry

There are 6 chains in PDB entry 8CSO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS -2	LYS 226
B	HIS -2	LYS 226
C	HIS -2	ALA 228
D	HIS -3	ARG 225
E	HIS -3	GLY 227
F	HIS -3	GLU 195

There are126 helices in PDB entry 8CSO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	17	Right-handed alpha
Helix 2	AA2	A	29	37	Right-handed alpha
Helix 3	AA3	A	37	47	Right-handed alpha
Helix 4	AA4	A	60	75	Right-handed alpha
Helix 5	AA5	A	86	98	Right-handed alpha
Helix 6	AA6	A	99	104	Right-handed 310
Helix 7	AA7	A	117	123	Right-handed alpha
Helix 8	AA8	A	129	144	Right-handed alpha
Helix 9	AA9	A	152	154	Right-handed 310
Helix 10	AB1	A	155	164	Right-handed alpha
Helix 11	AB2	A	189	196	Right-handed alpha
Helix 12	AB3	A	204	209	Right-handed alpha
Helix 13	AB4	A	212	226	Right-handed alpha
Helix 14	AB5	B	8	17	Right-handed alpha
Helix 15	AB6	B	30	37	Right-handed alpha
Helix 16	AB7	B	37	47	Right-handed alpha
Helix 17	AB8	B	60	74	Right-handed alpha
Helix 18	AB9	B	86	97	Right-handed alpha
Helix 19	AC1	B	98	104	Right-handed 310
Helix 20	AC2	B	117	123	Right-handed alpha
Helix 21	AC3	B	129	144	Right-handed alpha
Helix 22	AC4	B	152	154	Right-handed 310
Helix 23	AC5	B	155	164	Right-handed alpha
Helix 24	AC6	B	189	196	Right-handed alpha
Helix 25	AC7	B	204	209	Right-handed alpha
Helix 26	AC8	B	212	226	Right-handed alpha
Helix 27	AC9	C	8	17	Right-handed alpha
Helix 28	AD1	C	30	37	Right-handed alpha
Helix 29	AD2	C	37	47	Right-handed alpha
Helix 30	AD3	C	60	74	Right-handed alpha
Helix 31	AD4	C	86	97	Right-handed alpha
Helix 32	AD5	C	98	104	Right-handed 310
Helix 33	AD6	C	117	123	Right-handed alpha
Helix 34	AD7	C	129	144	Right-handed alpha
Helix 35	AD8	C	152	154	Right-handed 310
Helix 36	AD9	C	155	164	Right-handed alpha
Helix 37	AE1	C	189	197	Right-handed alpha
Helix 38	AE2	C	204	209	Right-handed alpha
Helix 39	AE3	C	212	227	Right-handed alpha
Helix 40	AE4	D	8	17	Right-handed alpha
Helix 41	AE5	D	30	37	Right-handed alpha
Helix 42	AE6	D	37	47	Right-handed alpha
Helix 43	AE7	D	60	75	Right-handed alpha
Helix 44	AE8	D	86	98	Right-handed alpha
Helix 45	AE9	D	99	104	Right-handed 310
Helix 46	AF1	D	117	123	Right-handed alpha
Helix 47	AF2	D	129	144	Right-handed alpha
Helix 48	AF3	D	152	154	Right-handed 310
Helix 49	AF4	D	155	164	Right-handed alpha
Helix 50	AF5	D	189	197	Right-handed alpha
Helix 51	AF6	D	204	209	Right-handed alpha
Helix 52	AF7	D	212	225	Right-handed alpha
Helix 53	AF8	E	8	17	Right-handed alpha
Helix 54	AF9	E	29	37	Right-handed alpha
Helix 55	AG1	E	37	47	Right-handed alpha
Helix 56	AG2	E	60	75	Right-handed alpha
Helix 57	AG3	E	86	98	Right-handed alpha
Helix 58	AG4	E	99	104	Right-handed 310
Helix 59	AG5	E	117	124	Right-handed alpha
Helix 60	AG6	E	129	144	Right-handed alpha
Helix 61	AG7	E	152	154	Right-handed 310
Helix 62	AG8	E	155	164	Right-handed alpha
Helix 63	AG9	E	189	197	Right-handed alpha
Helix 64	AH1	E	204	209	Right-handed alpha
Helix 65	AH2	E	212	227	Right-handed alpha
Helix 66	AH3	F	8	17	Right-handed alpha
Helix 67	AH4	F	30	37	Right-handed alpha
Helix 68	AH5	F	37	47	Right-handed alpha
Helix 69	AH6	F	60	74	Right-handed alpha
Helix 70	AH7	F	86	98	Right-handed alpha
Helix 71	AH8	F	99	104	Right-handed 310
Helix 72	AH9	F	117	123	Right-handed alpha
Helix 73	AI1	F	129	144	Right-handed alpha
Helix 74	AI2	F	152	154	Right-handed 310
Helix 75	AI3	F	155	164	Right-handed alpha
Helix 76	AI4	F	189	196	Right-handed alpha
Helix 77	AI5	F	204	209	Right-handed alpha
Helix 78	AI6	F	212	227	Right-handed alpha
Helix 79	AI7	G	8	17	Right-handed alpha
Helix 80	AI8	G	30	37	Right-handed alpha
Helix 81	AI9	G	37	47	Right-handed alpha
Helix 82	AJ1	G	60	74	Right-handed alpha
Helix 83	AJ2	G	86	98	Right-handed alpha
Helix 84	AJ3	G	99	104	Right-handed 310
Helix 85	AJ4	G	117	123	Right-handed alpha
Helix 86	AJ5	G	129	144	Right-handed alpha
Helix 87	AJ6	G	152	154	Right-handed 310
Helix 88	AJ7	G	155	164	Right-handed alpha
Helix 89	AJ8	G	189	197	Right-handed alpha
Helix 90	AJ9	G	214	225	Right-handed alpha
Helix 91	AK1	H	8	17	Right-handed alpha
Helix 92	AK2	H	30	37	Right-handed alpha
Helix 93	AK3	H	37	47	Right-handed alpha
Helix 94	AK4	H	60	74	Right-handed alpha
Helix 95	AK5	H	86	98	Right-handed alpha
Helix 96	AK6	H	99	104	Right-handed 310
Helix 97	AK7	H	117	123	Right-handed alpha
Helix 98	AK8	H	129	144	Right-handed alpha
Helix 99	AK9	H	152	154	Right-handed 310
Helix 100	AL1	H	155	164	Right-handed alpha
Helix 101	AL2	H	189	197	Right-handed alpha
Helix 102	AL3	H	213	225	Right-handed alpha
Helix 103	AL4	I	8	17	Right-handed alpha
Helix 104	AL5	I	30	37	Right-handed alpha
Helix 105	AL6	I	37	47	Right-handed alpha
Helix 106	AL7	I	60	74	Right-handed alpha
Helix 107	AL8	I	86	98	Right-handed alpha
Helix 108	AL9	I	99	104	Right-handed 310
Helix 109	AM1	I	117	123	Right-handed alpha
Helix 110	AM2	I	129	144	Right-handed alpha
Helix 111	AM3	I	152	154	Right-handed 310
Helix 112	AM4	I	155	164	Right-handed alpha
Helix 113	AM5	I	189	197	Right-handed alpha
Helix 114	AM6	I	204	209	Right-handed alpha
Helix 115	AM7	I	212	226	Right-handed alpha
Helix 116	AM8	J	8	17	Right-handed alpha
Helix 117	AM9	J	20	24	Right-handed 310
Helix 118	AN1	J	29	37	Right-handed alpha
Helix 119	AN2	J	37	47	Right-handed alpha
Helix 120	AN3	J	60	74	Right-handed alpha
Helix 121	AN4	J	86	98	Right-handed alpha
Helix 122	AN5	J	100	104	Right-handed 310
Helix 123	AN6	J	117	123	Right-handed alpha
Helix 124	AN7	J	129	144	Right-handed alpha
Helix 125	AN8	J	155	164	Right-handed alpha
Helix 126	AN9	J	214	223	Right-handed alpha

There are 10 sheets in PDB entry 8CSO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	0	4	first strand
Strand 2	A	25	28	parallel
Strand 3	A	51	57	parallel
Strand 4	A	78	82	parallel
Strand 5	A	106	110	parallel
Strand 6	A	148	150	parallel
Strand 7	A	168	171	parallel
Strand 8	A	200	203	parallel
Strand 9	A	0	4	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	0	4	first strand
Strand 2	B	25	29	parallel
Strand 3	B	51	57	parallel
Strand 4	B	78	82	parallel
Strand 5	B	106	110	parallel
Strand 6	B	148	150	parallel
Strand 7	B	168	171	parallel
Strand 8	B	200	203	parallel
Strand 9	B	0	4	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	0	4	first strand
Strand 2	C	25	29	parallel
Strand 3	C	51	57	parallel
Strand 4	C	78	82	parallel
Strand 5	C	106	110	parallel
Strand 6	C	148	150	parallel
Strand 7	C	168	171	parallel
Strand 8	C	200	203	parallel
Strand 9	C	0	4	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	0	4	first strand
Strand 2	D	25	29	parallel
Strand 3	D	51	57	parallel
Strand 4	D	78	82	parallel
Strand 5	D	106	110	parallel
Strand 6	D	148	150	parallel
Strand 7	D	168	171	parallel
Strand 8	D	200	203	parallel
Strand 9	D	0	4	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	0	4	first strand
Strand 2	E	25	28	parallel
Strand 3	E	51	57	parallel
Strand 4	E	78	82	parallel
Strand 5	E	106	110	parallel
Strand 6	E	148	150	parallel
Strand 7	E	168	171	parallel
Strand 8	E	200	203	parallel
Strand 9	E	0	4	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	0	4	first strand
Strand 2	F	25	29	parallel
Strand 3	F	51	57	parallel
Strand 4	F	78	82	parallel
Strand 5	F	106	110	parallel
Strand 6	F	148	150	parallel
Strand 7	F	168	171	parallel
Strand 8	F	200	203	parallel
Strand 9	F	0	4	parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	0	4	first strand
Strand 2	G	25	29	parallel
Strand 3	G	51	57	parallel
Strand 4	G	78	82	parallel
Strand 5	G	106	110	parallel
Strand 6	G	148	150	parallel
Strand 7	G	168	171	parallel
Strand 8	G	200	203	parallel
Strand 9	G	0	4	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	0	4	first strand
Strand 2	H	25	29	parallel
Strand 3	H	51	57	parallel
Strand 4	H	78	82	parallel
Strand 5	H	106	110	parallel
Strand 6	H	148	150	parallel
Strand 7	H	168	171	parallel
Strand 8	H	200	203	parallel
Strand 9	H	0	4	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	0	4	first strand
Strand 2	I	25	29	parallel
Strand 3	I	51	57	parallel
Strand 4	I	78	82	parallel
Strand 5	I	106	110	parallel
Strand 6	I	148	150	parallel
Strand 7	I	168	171	parallel
Strand 8	I	200	203	parallel
Strand 9	I	0	4	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1	3	first strand
Strand 2	J	25	28	parallel
Strand 3	J	51	57	parallel
Strand 4	J	78	82	parallel
Strand 5	J	106	110	parallel
Strand 6	J	148	150	parallel
Strand 7	J	168	170	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CSO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CSO