Analysis of interatomic Contacts of Structural Units in PDB entry:
8CSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CSZ entry

There are 4 chains in PDB entry 8CSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	MET 1	TYR 494
C	A 1	C 208
B	C 1	T 33
E	C 111	T 129

There are 15 helices in PDB entry 8CSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	21	29	Right-handed alpha
Helix 2	AA2	D	85	87	Right-handed 310
Helix 3	AA3	D	88	109	Right-handed alpha
Helix 4	AA4	D	109	121	Right-handed alpha
Helix 5	AA5	D	163	184	Right-handed alpha
Helix 6	AA6	D	207	212	Right-handed 310
Helix 7	AA7	D	221	230	Right-handed alpha
Helix 8	AA8	D	265	275	Right-handed alpha
Helix 9	AA9	D	275	286	Right-handed alpha
Helix 10	AB1	D	294	314	Right-handed alpha
Helix 11	AB2	D	323	334	Right-handed alpha
Helix 12	AB3	D	340	351	Right-handed alpha
Helix 13	AB4	D	408	416	Right-handed alpha
Helix 14	AB5	D	417	423	Right-handed alpha
Helix 15	AB6	D	480	482	Right-handed 310

There are 7 sheets in PDB entry 8CSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	4	7	anti-parallel
Strand 3	D	41	44	parallel
Strand 4	D	32	36	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	188	193	parallel
Strand 3	D	56	60	parallel
Strand 4	D	67	71	anti-parallel
Strand 5	D	77	84	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	491	493	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	131	first strand
Strand 2	D	140	142	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	246	first strand
Strand 2	D	261	264	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	380	first strand
Strand 2	D	432	433	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	386	389	anti-parallel
Strand 3	D	425	427	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	478	first strand
Strand 2	D	465	471	anti-parallel
Strand 3	D	452	462	anti-parallel
Strand 4	D	444	446	anti-parallel
Strand 5	D	483	486	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CSZ