Analysis of interatomic Contacts of Structural Units in PDB entry:
8CT3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CT3 entry

There are 4 chains in PDB entry 8CT3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 78LEU 117
D
 GLY 78LEU 117
C
 PRO 371THR 894
E
 PRO 371THR 894
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 8CT3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
88 114Right-handed alpha
Helix 2
AA2
D
88 114Right-handed alpha
Helix 3
AA3
C
379 390Right-handed alpha
Helix 4
AA4
C
391 393Right-handed 310
Helix 5
AA5
C
394 399Right-handed alpha
Helix 6
AA6
C
402 431Right-handed alpha
Helix 7
AA7
C
436 455Right-handed alpha
Helix 8
AA8
C
465 483Right-handed alpha
Helix 9
AA9
C
485 507Right-handed alpha
Helix 10
AB1
C
508 516Right-handed 310
Helix 11
AB2
C
517 547Right-handed alpha
Helix 12
AB3
C
569 594Right-handed alpha
Helix 13
AB4
C
598 608Right-handed alpha
Helix 14
AB5
C
608 623Right-handed alpha
Helix 15
AB6
C
660 667Right-handed alpha
Helix 16
AB7
C
667 690Right-handed alpha
Helix 17
AB8
C
691 695Right-handed 310
Helix 18
AB9
C
701 719Right-handed alpha
Helix 19
AC1
C
727 738Right-handed alpha
Helix 20
AC2
C
760 772Right-handed alpha
Helix 21
AC3
C
776 781Right-handed alpha
Helix 22
AC4
C
784 799Right-handed alpha
Helix 23
AC5
C
803 811Right-handed alpha
Helix 24
AC6
C
812 814Right-handed 310
Helix 25
AC7
C
815 819Right-handed 310
Helix 26
AC8
C
822 827Right-handed alpha
Helix 27
AC9
C
829 852Right-handed alpha
Helix 28
AD1
C
855 857Right-handed 310
Helix 29
AD2
C
858 865Right-handed alpha
Helix 30
AD3
C
865 872Right-handed alpha
Helix 31
AD4
C
872 878Right-handed alpha
Helix 32
AD5
C
879 887Right-handed alpha
Helix 33
AD6
E
379 390Right-handed alpha
Helix 34
AD7
E
391 393Right-handed 310
Helix 35
AD8
E
394 399Right-handed alpha
Helix 36
AD9
E
402 431Right-handed alpha
Helix 37
AE1
E
436 455Right-handed alpha
Helix 38
AE2
E
465 483Right-handed alpha
Helix 39
AE3
E
485 507Right-handed alpha
Helix 40
AE4
E
508 516Right-handed 310
Helix 41
AE5
E
517 547Right-handed alpha
Helix 42
AE6
E
569 594Right-handed alpha
Helix 43
AE7
E
598 608Right-handed alpha
Helix 44
AE8
E
608 623Right-handed alpha
Helix 45
AE9
E
660 667Right-handed alpha
Helix 46
AF1
E
667 690Right-handed alpha
Helix 47
AF2
E
691 695Right-handed 310
Helix 48
AF3
E
701 719Right-handed alpha
Helix 49
AF4
E
727 738Right-handed alpha
Helix 50
AF5
E
760 772Right-handed alpha
Helix 51
AF6
E
776 781Right-handed alpha
Helix 52
AF7
E
784 799Right-handed alpha
Helix 53
AF8
E
803 811Right-handed alpha
Helix 54
AF9
E
812 814Right-handed 310
Helix 55
AG1
E
815 819Right-handed 310
Helix 56
AG2
E
822 827Right-handed alpha
Helix 57
AG3
E
829 852Right-handed alpha
Helix 58
AG4
E
855 857Right-handed 310
Helix 59
AG5
E
858 865Right-handed alpha
Helix 60
AG6
E
865 872Right-handed alpha
Helix 61
AG7
E
872 878Right-handed alpha
Helix 62
AG8
E
879 887Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8CT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
462 463first strand
Strand 2
C
725 726anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
739 742first strand
Strand 2
C
752 756anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
462 463first strand
Strand 2
E
725 726anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
739 742first strand
Strand 2
E
752 756anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il