Analysis of interatomic Contacts of Structural Units in PDB entry:
8CTE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CTE entry

There are 18 chains in PDB entry 8CTE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	ALA 461
W	GLU 2	GLU 33
X	ALA 4	ALA 691
K	SER 2	PHE 417
L	MET 1	ARG 409
Q	MET 1	ARG 409
N	GLY 78	LEU 117
D	GLY 78	LEU 117
P	LYS 56	THR 894
T	GLN 30	THR 894
S	SER 3	SER 86
S	GLN 88	GLN 249
O	SER 3	SER 86
O	GLN 88	GLN 249
R	SER 3	SER 86
R	GLN 88	GLN 249
M	SER 3	SER 86
M	GLN 88	GLN 249

There are220 helices in PDB entry 8CTE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	23	Right-handed alpha
Helix 2	AA2	A	24	35	Right-handed alpha
Helix 3	AA3	A	47	55	Right-handed alpha
Helix 4	AA4	A	57	67	Right-handed alpha
Helix 5	AA5	A	80	89	Right-handed alpha
Helix 6	AA6	A	90	100	Right-handed alpha
Helix 7	AA7	A	113	121	Right-handed alpha
Helix 8	AA8	A	123	133	Right-handed alpha
Helix 9	AA9	A	146	155	Right-handed alpha
Helix 10	AB1	A	156	167	Right-handed alpha
Helix 11	AB2	A	175	184	Right-handed alpha
Helix 12	AB3	A	185	196	Right-handed alpha
Helix 13	AB4	A	208	217	Right-handed alpha
Helix 14	AB5	A	218	229	Right-handed alpha
Helix 15	AB6	A	241	250	Right-handed alpha
Helix 16	AB7	A	251	262	Right-handed alpha
Helix 17	AB8	A	274	283	Right-handed alpha
Helix 18	AB9	A	284	294	Right-handed alpha
Helix 19	AC1	A	307	315	Right-handed alpha
Helix 20	AC2	A	317	327	Right-handed alpha
Helix 21	AC3	A	340	349	Right-handed alpha
Helix 22	AC4	A	350	360	Right-handed alpha
Helix 23	AC5	A	373	381	Right-handed alpha
Helix 24	AC6	A	383	393	Right-handed alpha
Helix 25	AC7	A	406	415	Right-handed alpha
Helix 26	AC8	A	416	426	Right-handed alpha
Helix 27	AC9	A	439	447	Right-handed alpha
Helix 28	AD1	A	449	460	Right-handed alpha
Helix 29	AD2	W	4	7	Right-handed 310
Helix 30	AD3	W	8	17	Right-handed alpha
Helix 31	AD4	W	18	22	Right-handed 310
Helix 32	AD5	X	13	21	Right-handed alpha
Helix 33	AD6	X	51	58	Right-handed alpha
Helix 34	AD7	X	151	160	Right-handed alpha
Helix 35	AD8	X	187	197	Right-handed alpha
Helix 36	AD9	X	201	206	Right-handed 310
Helix 37	AE1	X	207	227	Right-handed alpha
Helix 38	AE2	X	247	257	Right-handed alpha
Helix 39	AE3	X	264	268	Right-handed 310
Helix 40	AE4	X	269	283	Right-handed alpha
Helix 41	AE5	X	368	374	Right-handed alpha
Helix 42	AE6	X	381	389	Right-handed alpha
Helix 43	AE7	X	431	436	Right-handed alpha
Helix 44	AE8	X	441	459	Right-handed alpha
Helix 45	AE9	K	12	31	Right-handed alpha
Helix 46	AF1	K	43	65	Right-handed alpha
Helix 47	AF2	K	72	99	Right-handed alpha
Helix 48	AF3	K	109	128	Right-handed alpha
Helix 49	AF4	K	135	162	Right-handed alpha
Helix 50	AF5	K	165	170	Right-handed 310
Helix 51	AF6	K	171	187	Right-handed alpha
Helix 52	AF7	K	202	225	Right-handed alpha
Helix 53	AF8	K	230	256	Right-handed alpha
Helix 54	AF9	K	266	274	Right-handed alpha
Helix 55	AG1	K	275	281	Right-handed alpha
Helix 56	AG2	K	290	312	Right-handed alpha
Helix 57	AG3	K	326	350	Right-handed alpha
Helix 58	AG4	K	361	389	Right-handed alpha
Helix 59	AG5	K	390	394	Right-handed 310
Helix 60	AG6	K	397	401	Right-handed 310
Helix 61	AG7	L	3	23	Right-handed alpha
Helix 62	AG8	L	50	69	Right-handed alpha
Helix 63	AG9	L	70	72	Right-handed 310
Helix 64	AH1	L	75	104	Right-handed alpha
Helix 65	AH2	L	111	132	Right-handed alpha
Helix 66	AH3	L	137	162	Right-handed alpha
Helix 67	AH4	L	174	189	Right-handed alpha
Helix 68	AH5	L	204	228	Right-handed alpha
Helix 69	AH6	L	233	262	Right-handed alpha
Helix 70	AH7	L	263	266	Right-handed 310
Helix 71	AH8	L	268	275	Right-handed alpha
Helix 72	AH9	L	277	283	Right-handed alpha
Helix 73	AI1	L	292	321	Right-handed alpha
Helix 74	AI2	L	329	351	Right-handed alpha
Helix 75	AI3	L	357	384	Right-handed alpha
Helix 76	AI4	L	398	402	Right-handed 310
Helix 77	AI5	Q	3	23	Right-handed alpha
Helix 78	AI6	Q	47	69	Right-handed alpha
Helix 79	AI7	Q	70	72	Right-handed 310
Helix 80	AI8	Q	75	104	Right-handed alpha
Helix 81	AI9	Q	111	132	Right-handed alpha
Helix 82	AJ1	Q	137	162	Right-handed alpha
Helix 83	AJ2	Q	174	189	Right-handed alpha
Helix 84	AJ3	Q	191	195	Right-handed 310
Helix 85	AJ4	Q	204	228	Right-handed alpha
Helix 86	AJ5	Q	233	262	Right-handed alpha
Helix 87	AJ6	Q	263	266	Right-handed 310
Helix 88	AJ7	Q	268	275	Right-handed alpha
Helix 89	AJ8	Q	277	283	Right-handed alpha
Helix 90	AJ9	Q	292	321	Right-handed alpha
Helix 91	AK1	Q	329	351	Right-handed alpha
Helix 92	AK2	Q	357	384	Right-handed alpha
Helix 93	AK3	Q	398	402	Right-handed 310
Helix 94	AK4	N	88	114	Right-handed alpha
Helix 95	AK5	D	88	114	Right-handed alpha
Helix 96	AK6	P	104	116	Right-handed alpha
Helix 97	AK7	P	127	142	Right-handed alpha
Helix 98	AK8	P	146	148	Right-handed 310
Helix 99	AK9	P	149	158	Right-handed alpha
Helix 100	AL1	P	163	167	Right-handed 310
Helix 101	AL2	P	194	201	Right-handed alpha
Helix 102	AL3	P	277	291	Right-handed alpha
Helix 103	AL4	P	291	300	Right-handed alpha
Helix 104	AL5	P	303	317	Right-handed alpha
Helix 105	AL6	P	328	334	Right-handed alpha
Helix 106	AL7	P	335	347	Right-handed alpha
Helix 107	AL8	P	379	390	Right-handed alpha
Helix 108	AL9	P	391	393	Right-handed 310
Helix 109	AM1	P	394	399	Right-handed alpha
Helix 110	AM2	P	402	431	Right-handed alpha
Helix 111	AM3	P	436	455	Right-handed alpha
Helix 112	AM4	P	465	483	Right-handed alpha
Helix 113	AM5	P	485	507	Right-handed alpha
Helix 114	AM6	P	508	516	Right-handed 310
Helix 115	AM7	P	517	547	Right-handed alpha
Helix 116	AM8	P	569	594	Right-handed alpha
Helix 117	AM9	P	598	608	Right-handed alpha
Helix 118	AN1	P	608	623	Right-handed alpha
Helix 119	AN2	P	660	667	Right-handed alpha
Helix 120	AN3	P	667	690	Right-handed alpha
Helix 121	AN4	P	691	695	Right-handed 310
Helix 122	AN5	P	701	719	Right-handed alpha
Helix 123	AN6	P	727	738	Right-handed alpha
Helix 124	AN7	P	760	772	Right-handed alpha
Helix 125	AN8	P	776	781	Right-handed alpha
Helix 126	AN9	P	784	799	Right-handed alpha
Helix 127	AO1	P	803	812	Right-handed alpha
Helix 128	AO2	P	813	814	Right-handed 310
Helix 129	AO3	P	815	819	Right-handed 310
Helix 130	AO4	P	822	827	Right-handed alpha
Helix 131	AO5	P	829	852	Right-handed alpha
Helix 132	AO6	P	855	857	Right-handed 310
Helix 133	AO7	P	858	865	Right-handed alpha
Helix 134	AO8	P	865	878	Right-handed alpha
Helix 135	AO9	P	879	887	Right-handed alpha
Helix 136	AP1	T	42	47	Right-handed 310
Helix 137	AP2	T	103	116	Right-handed alpha
Helix 138	AP3	T	127	142	Right-handed alpha
Helix 139	AP4	T	146	148	Right-handed 310
Helix 140	AP5	T	149	158	Right-handed alpha
Helix 141	AP6	T	163	167	Right-handed 310
Helix 142	AP7	T	194	201	Right-handed alpha
Helix 143	AP8	T	277	291	Right-handed alpha
Helix 144	AP9	T	291	300	Right-handed alpha
Helix 145	AQ1	T	303	317	Right-handed alpha
Helix 146	AQ2	T	328	334	Right-handed alpha
Helix 147	AQ3	T	335	347	Right-handed alpha
Helix 148	AQ4	T	379	390	Right-handed alpha
Helix 149	AQ5	T	391	393	Right-handed 310
Helix 150	AQ6	T	394	399	Right-handed alpha
Helix 151	AQ7	T	402	431	Right-handed alpha
Helix 152	AQ8	T	436	455	Right-handed alpha
Helix 153	AQ9	T	465	483	Right-handed alpha
Helix 154	AR1	T	485	507	Right-handed alpha
Helix 155	AR2	T	508	516	Right-handed 310
Helix 156	AR3	T	517	547	Right-handed alpha
Helix 157	AR4	T	569	594	Right-handed alpha
Helix 158	AR5	T	598	608	Right-handed alpha
Helix 159	AR6	T	608	623	Right-handed alpha
Helix 160	AR7	T	660	667	Right-handed alpha
Helix 161	AR8	T	667	690	Right-handed alpha
Helix 162	AR9	T	691	695	Right-handed 310
Helix 163	AS1	T	701	719	Right-handed alpha
Helix 164	AS2	T	727	738	Right-handed alpha
Helix 165	AS3	T	760	772	Right-handed alpha
Helix 166	AS4	T	776	781	Right-handed alpha
Helix 167	AS5	T	784	799	Right-handed alpha
Helix 168	AS6	T	803	812	Right-handed alpha
Helix 169	AS7	T	813	814	Right-handed 310
Helix 170	AS8	T	815	819	Right-handed 310
Helix 171	AS9	T	822	827	Right-handed alpha
Helix 172	AT1	T	829	852	Right-handed alpha
Helix 173	AT2	T	855	857	Right-handed 310
Helix 174	AT3	T	858	865	Right-handed alpha
Helix 175	AT4	T	865	878	Right-handed alpha
Helix 176	AT5	T	879	887	Right-handed alpha
Helix 177	AT6	S	3	6	Right-handed 310
Helix 178	AT7	S	7	33	Right-handed alpha
Helix 179	AT8	S	34	37	Right-handed 310
Helix 180	AT9	S	48	72	Right-handed alpha
Helix 181	AU1	S	76	86	Right-handed alpha
Helix 182	AU2	S	90	116	Right-handed alpha
Helix 183	AU3	S	134	157	Right-handed alpha
Helix 184	AU4	S	167	188	Right-handed alpha
Helix 185	AU5	S	192	204	Right-handed alpha
Helix 186	AU6	S	210	230	Right-handed alpha
Helix 187	AU7	S	237	248	Right-handed alpha
Helix 188	AU8	O	3	6	Right-handed 310
Helix 189	AU9	O	7	33	Right-handed alpha
Helix 190	AV1	O	34	37	Right-handed 310
Helix 191	AV2	O	48	72	Right-handed alpha
Helix 192	AV3	O	76	86	Right-handed alpha
Helix 193	AV4	O	90	116	Right-handed alpha
Helix 194	AV5	O	134	157	Right-handed alpha
Helix 195	AV6	O	167	188	Right-handed alpha
Helix 196	AV7	O	192	204	Right-handed alpha
Helix 197	AV8	O	210	230	Right-handed alpha
Helix 198	AV9	O	237	248	Right-handed alpha
Helix 199	AW1	R	3	6	Right-handed 310
Helix 200	AW2	R	7	33	Right-handed alpha
Helix 201	AW3	R	34	37	Right-handed 310
Helix 202	AW4	R	48	72	Right-handed alpha
Helix 203	AW5	R	76	86	Right-handed alpha
Helix 204	AW6	R	90	116	Right-handed alpha
Helix 205	AW7	R	134	157	Right-handed alpha
Helix 206	AW8	R	167	188	Right-handed alpha
Helix 207	AW9	R	192	204	Right-handed alpha
Helix 208	AX1	R	210	230	Right-handed alpha
Helix 209	AX2	R	237	248	Right-handed alpha
Helix 210	AX3	M	3	6	Right-handed 310
Helix 211	AX4	M	7	33	Right-handed alpha
Helix 212	AX5	M	34	37	Right-handed 310
Helix 213	AX6	M	48	72	Right-handed alpha
Helix 214	AX7	M	76	86	Right-handed alpha
Helix 215	AX8	M	90	116	Right-handed alpha
Helix 216	AX9	M	134	157	Right-handed alpha
Helix 217	AY1	M	167	188	Right-handed alpha
Helix 218	AY2	M	192	204	Right-handed alpha
Helix 219	AY3	M	210	230	Right-handed alpha
Helix 220	AY4	M	237	248	Right-handed alpha

There are 23 sheets in PDB entry 8CTE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	7	11	first strand
Strand 2	X	39	45	anti-parallel
Strand 3	X	101	107	anti-parallel
Strand 4	X	91	97	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	31	34	first strand
Strand 2	X	129	137	parallel
Strand 3	X	115	123	anti-parallel
Strand 4	X	59	65	anti-parallel
Strand 5	X	76	80	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	163	169	first strand
Strand 2	X	174	180	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	322	327	first strand
Strand 2	X	286	296	anti-parallel
Strand 3	X	330	334	anti-parallel
Strand 4	X	345	352	anti-parallel
Strand 5	X	362	367	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	322	327	first strand
Strand 2	X	286	296	anti-parallel
Strand 3	X	416	421	anti-parallel
Strand 4	X	428	430	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	303	308	first strand
Strand 2	X	392	398	parallel
Strand 3	X	404	406	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	408	409	first strand
Strand 2	X	577	586	parallel
Strand 3	X	484	486	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	408	409	first strand
Strand 2	X	577	586	parallel
Strand 3	X	561	570	anti-parallel
Strand 4	X	505	516	anti-parallel
Strand 5	X	522	535	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	475	480	first strand
Strand 2	X	490	499	anti-parallel
Strand 3	X	540	548	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	590	593	first strand
Strand 2	X	604	611	anti-parallel
Strand 3	X	647	654	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	597	599	first strand
Strand 2	X	676	685	parallel
Strand 3	X	660	669	anti-parallel
Strand 4	X	622	627	anti-parallel
Strand 5	X	631	638	anti-parallel
Strand 6	T	35	36	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	32	34	first strand
Strand 2	K	106	108	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	24	25	first strand
Strand 2	L	108	109	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	24	25	first strand
Strand 2	Q	108	109	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	85	87	first strand
Strand 2	P	73	81	anti-parallel
Strand 3	P	58	67	anti-parallel
Strand 4	P	161	162	first strand

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	118	123	first strand
Strand 2	P	241	251	parallel
Strand 3	P	262	270	anti-parallel
Strand 4	P	226	233	parallel
Strand 5	P	58	67	parallel
Strand 6	P	73	81	anti-parallel
Strand 7	P	173	175	first strand

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	102	103	first strand
Strand 2	T	319	321	anti-parallel
Strand 3	P	319	321	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	462	463	first strand
Strand 2	P	725	726	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	739	742	first strand
Strand 2	P	752	756	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	85	87	first strand
Strand 2	T	73	81	anti-parallel
Strand 3	T	58	67	anti-parallel
Strand 4	T	161	162	first strand

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	118	123	first strand
Strand 2	T	241	251	parallel
Strand 3	T	262	270	anti-parallel
Strand 4	T	226	233	parallel
Strand 5	T	58	67	parallel
Strand 6	T	73	81	anti-parallel
Strand 7	T	173	175	first strand

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	462	463	first strand
Strand 2	T	725	726	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	739	742	first strand
Strand 2	T	752	756	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CTE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CTE