Analysis of interatomic Contacts of Structural Units in PDB entry:
8CTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CTM entry

There are 4 chains in PDB entry 8CTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 313
B
 PRO 2GLN 314
C
 PRO 2PRO 313
D
 PRO 2PRO 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8CTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
41 57Right-handed alpha
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
129 139Right-handed alpha
Helix 5
AA5
A
141 146Right-handed alpha
Helix 6
AA6
A
166 171Right-handed alpha
Helix 7
AA7
A
172 181Right-handed alpha
Helix 8
AA8
A
190 195Right-handed alpha
Helix 9
AA9
A
200 211Right-handed alpha
Helix 10
AB1
A
212 229Right-handed alpha
Helix 11
AB2
A
230 233Right-handed 310
Helix 12
AB3
A
241 250Right-handed alpha
Helix 13
AB4
A
295 311Right-handed alpha
Helix 14
AB5
B
12 25Right-handed alpha
Helix 15
AB6
B
41 56Right-handed alpha
Helix 16
AB7
B
104 116Right-handed alpha
Helix 17
AB8
B
129 139Right-handed alpha
Helix 18
AB9
B
141 146Right-handed alpha
Helix 19
AC1
B
166 171Right-handed alpha
Helix 20
AC2
B
172 181Right-handed alpha
Helix 21
AC3
B
190 195Right-handed alpha
Helix 22
AC4
B
200 211Right-handed alpha
Helix 23
AC5
B
212 234Right-handed alpha
Helix 24
AC6
B
241 250Right-handed alpha
Helix 25
AC7
B
295 311Right-handed alpha
Helix 26
AC8
C
12 25Right-handed alpha
Helix 27
AC9
C
41 57Right-handed alpha
Helix 28
AD1
C
104 116Right-handed alpha
Helix 29
AD2
C
129 139Right-handed alpha
Helix 30
AD3
C
141 146Right-handed alpha
Helix 31
AD4
C
166 171Right-handed alpha
Helix 32
AD5
C
172 181Right-handed alpha
Helix 33
AD6
C
190 195Right-handed alpha
Helix 34
AD7
C
200 211Right-handed alpha
Helix 35
AD8
C
212 229Right-handed alpha
Helix 36
AD9
C
241 250Right-handed alpha
Helix 37
AE1
C
295 311Right-handed alpha
Helix 38
AE2
D
12 25Right-handed alpha
Helix 39
AE3
D
41 56Right-handed alpha
Helix 40
AE4
D
104 116Right-handed alpha
Helix 41
AE5
D
129 139Right-handed alpha
Helix 42
AE6
D
141 146Right-handed alpha
Helix 43
AE7
D
166 171Right-handed alpha
Helix 44
AE8
D
172 181Right-handed alpha
Helix 45
AE9
D
190 195Right-handed alpha
Helix 46
AF1
D
200 209Right-handed alpha
Helix 47
AF2
D
212 231Right-handed alpha
Helix 48
AF3
D
241 250Right-handed alpha
Helix 49
AF4
D
295 311Right-handed alpha
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There are 8 sheets in PDB entry 8CTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
28 35parallel
Strand 3
A
3 9parallel
Strand 4
A
121 125parallel
Strand 5
A
148 152parallel
Strand 6
A
186 189parallel
Strand 7
A
288 294parallel
Strand 8
A
254 258anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
274 276anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
28 35parallel
Strand 3
B
3 9parallel
Strand 4
B
121 125parallel
Strand 5
B
148 152parallel
Strand 6
B
186 189parallel
Strand 7
B
288 294parallel
Strand 8
B
254 258anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
274 276anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 65first strand
Strand 2
C
28 35parallel
Strand 3
C
3 9parallel
Strand 4
C
121 125parallel
Strand 5
C
148 152parallel
Strand 6
C
186 189parallel
Strand 7
C
288 294parallel
Strand 8
C
254 258anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
261 263first strand
Strand 2
C
274 276anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 65first strand
Strand 2
D
28 35parallel
Strand 3
D
3 9parallel
Strand 4
D
121 125parallel
Strand 5
D
148 152parallel
Strand 6
D
186 189parallel
Strand 7
D
288 294parallel
Strand 8
D
254 258anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
261 263first strand
Strand 2
D
274 276anti-parallel
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