Analysis of interatomic Contacts of Structural Units in PDB entry:
8CTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CTP entry

There is 1 chain in PDB entry 8CTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ASN 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8CTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 19Right-handed alpha
Helix 2
AA2
A
20 23Right-handed 310
Helix 3
AA3
A
61 77Right-handed alpha
Helix 4
AA4
A
92 109Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
130 143Right-handed alpha
Helix 7
AA7
A
144 147Right-handed 310
Helix 8
AA8
A
206 226Right-handed alpha
Helix 9
AA9
A
246 252Right-handed alpha
Helix 10
AB1
A
306 313Right-handed alpha
Helix 11
AB2
A
313 325Right-handed alpha
Helix 12
AB3
A
348 361Right-handed alpha
Helix 13
AB4
A
388 405Right-handed alpha
Helix 14
AB5
A
406 416Right-handed alpha
Helix 15
AB6
A
472 483Right-handed alpha
Helix 16
AB7
A
483 492Right-handed alpha
Helix 17
AB8
A
493 495Right-handed 310
Helix 18
AB9
A
500 502Right-handed 310
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There are 2 sheets in PDB entry 8CTP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
177 181anti-parallel
Strand 4
A
170 173anti-parallel
Strand 5
A
81 87anti-parallel
Strand 6
A
113 120parallel
Strand 7
A
149 156parallel
Strand 8
A
233 237anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
27 35anti-parallel
Strand 4
A
262 270anti-parallel
Strand 5
A
464 471anti-parallel
Strand 6
A
450 454anti-parallel
Strand 7
A
442 446anti-parallel
Strand 8
A
329 334anti-parallel
Strand 9
A
364 369parallel
Strand 10
A
418 422parallel
Strand 11
A
497 498anti-parallel
Strand 12
A
503 504anti-parallel
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