Analysis of interatomic Contacts of Structural Units in PDB entry:
8CTY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CTY entry

There are 19 chains in PDB entry 8CTY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 62	GLY 194
B	GLU 62	GLY 194
C	GLU 62	ALA 191
D	GLU 62	ALA 191
E	GLU 62	LYS 190
F	GLU 62	TYR 193
G	GLU 62	TYR 193
H	GLU 62	ILE 189
I	C 1	T 8
I	G 10	G 12
J	C 1	T 8
J	G 10	G 12
K	C 1	T 8
K	G 10	G 12
L	C 1	T 8
L	G 10	G 12
M	C 1	T 8
M	G 10	G 12
N	C 1	G 12

There are 35 helices in PDB entry 8CTY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	123	Right-handed alpha
Helix 2	AA2	A	133	142	Right-handed alpha
Helix 3	AA3	A	155	172	Right-handed alpha
Helix 4	AA4	A	182	187	Right-handed alpha
Helix 5	AA5	B	104	123	Right-handed alpha
Helix 6	AA6	B	133	143	Right-handed alpha
Helix 7	AA7	B	152	154	Right-handed 310
Helix 8	AA8	B	155	171	Right-handed alpha
Helix 9	AA9	B	182	187	Right-handed alpha
Helix 10	AB1	C	104	123	Right-handed alpha
Helix 11	AB2	C	133	143	Right-handed alpha
Helix 12	AB3	C	152	154	Right-handed 310
Helix 13	AB4	C	155	171	Right-handed alpha
Helix 14	AB5	C	182	187	Right-handed alpha
Helix 15	AB6	D	104	123	Right-handed alpha
Helix 16	AB7	D	133	143	Right-handed alpha
Helix 17	AB8	D	155	172	Right-handed alpha
Helix 18	AB9	D	182	187	Right-handed alpha
Helix 19	AC1	E	104	123	Right-handed alpha
Helix 20	AC2	E	133	143	Right-handed alpha
Helix 21	AC3	E	155	171	Right-handed alpha
Helix 22	AC4	E	182	187	Right-handed alpha
Helix 23	AC5	F	104	123	Right-handed alpha
Helix 24	AC6	F	133	142	Right-handed alpha
Helix 25	AC7	F	152	154	Right-handed 310
Helix 26	AC8	F	155	172	Right-handed alpha
Helix 27	AC9	F	182	187	Right-handed alpha
Helix 28	AD1	G	104	123	Right-handed alpha
Helix 29	AD2	G	133	142	Right-handed alpha
Helix 30	AD3	G	155	172	Right-handed alpha
Helix 31	AD4	G	182	187	Right-handed alpha
Helix 32	AD5	H	104	123	Right-handed alpha
Helix 33	AD6	H	133	142	Right-handed alpha
Helix 34	AD7	H	155	170	Right-handed alpha
Helix 35	AD8	H	182	187	Right-handed alpha

There are 12 sheets in PDB entry 8CTY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	103	first strand
Strand 2	A	79	87	anti-parallel
Strand 3	A	68	75	anti-parallel
Strand 4	A	129	131	parallel
Strand 5	A	178	180	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	103	first strand
Strand 2	B	79	87	anti-parallel
Strand 3	B	68	74	anti-parallel
Strand 4	B	129	131	parallel
Strand 5	B	178	180	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	103	first strand
Strand 2	C	79	87	anti-parallel
Strand 3	C	68	75	anti-parallel
Strand 4	C	129	131	parallel
Strand 5	C	178	180	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	79	87	anti-parallel
Strand 3	D	100	103	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	79	87	anti-parallel
Strand 3	D	68	75	anti-parallel
Strand 4	D	129	131	parallel
Strand 5	D	178	180	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	96	first strand
Strand 2	E	79	87	anti-parallel
Strand 3	E	100	103	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	96	first strand
Strand 2	E	79	87	anti-parallel
Strand 3	E	68	75	anti-parallel
Strand 4	E	129	131	parallel
Strand 5	E	178	180	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	103	first strand
Strand 2	F	79	87	anti-parallel
Strand 3	F	68	75	anti-parallel
Strand 4	F	129	131	parallel
Strand 5	F	178	180	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	96	first strand
Strand 2	G	79	87	anti-parallel
Strand 3	G	100	103	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	93	96	first strand
Strand 2	G	79	87	anti-parallel
Strand 3	G	68	75	anti-parallel
Strand 4	G	129	131	parallel
Strand 5	G	178	180	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	96	first strand
Strand 2	H	79	87	anti-parallel
Strand 3	H	100	103	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	93	96	first strand
Strand 2	H	79	87	anti-parallel
Strand 3	H	68	75	anti-parallel
Strand 4	H	129	131	parallel
Strand 5	H	178	180	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CTY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CTY