Analysis of interatomic Contacts of Structural Units in PDB entry:
8CU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CU0 entry

There are 7 chains in PDB entry 8CU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 62TYR 193
B
 GLU 62GLY 194
C
 GLU 62ALA 191
D
 C 1 G 8
D
 C 10 G 12
E
 C 1 G 8
E
 C 10 G 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8CU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 123Right-handed alpha
Helix 2
AA2
A
133 143Right-handed alpha
Helix 3
AA3
A
152 154Right-handed 310
Helix 4
AA4
A
155 172Right-handed alpha
Helix 5
AA5
A
182 187Right-handed alpha
Helix 6
AA6
B
104 123Right-handed alpha
Helix 7
AA7
B
133 143Right-handed alpha
Helix 8
AA8
B
155 172Right-handed alpha
Helix 9
AA9
B
182 187Right-handed alpha
Helix 10
AB1
C
104 123Right-handed alpha
Helix 11
AB2
C
133 143Right-handed alpha
Helix 12
AB3
C
155 172Right-handed alpha
Helix 13
AB4
C
182 187Right-handed alpha
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There are 3 sheets in PDB entry 8CU0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 103first strand
Strand 2
A
79 87anti-parallel
Strand 3
A
68 74anti-parallel
Strand 4
A
129 131parallel
Strand 5
A
178 180parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 103first strand
Strand 2
B
79 87anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
129 131parallel
Strand 5
B
178 180parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 103first strand
Strand 2
C
79 87anti-parallel
Strand 3
C
68 75anti-parallel
Strand 4
C
129 131parallel
Strand 5
C
178 180parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il