Analysis of interatomic Contacts of Structural Units in PDB entry:
8CU9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CU9 entry

There is 1 chain in PDB entry 8CU9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12LYS 462
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8CU9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
32 35Right-handed 310
Helix 3
AA3
A
43 54Right-handed alpha
Helix 4
AA4
A
66 74Right-handed alpha
Helix 5
AA5
A
89 98Right-handed alpha
Helix 6
AA6
A
99 101Right-handed 310
Helix 7
AA7
A
118 129Right-handed alpha
Helix 8
AA8
A
162 166Right-handed 310
Helix 9
AA9
A
169 173Right-handed 310
Helix 10
AB1
A
185 194Right-handed alpha
Helix 11
AB2
A
207 217Right-handed alpha
Helix 12
AB3
A
227 232Right-handed 310
Helix 13
AB4
A
236 259Right-handed alpha
Helix 14
AB5
A
264 266Right-handed 310
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There are 7 sheets in PDB entry 8CU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 83first strand
Strand 2
A
59 63parallel
Strand 3
A
14 20parallel
Strand 4
A
106 111parallel
Strand 5
A
175 184anti-parallel
Strand 6
A
134 140anti-parallel
Strand 7
A
220 223parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
41 42anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 153first strand
Strand 2
A
156 161anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
281 282parallel
Strand 3
A
299 300parallel
Strand 4
A
316 317parallel
Strand 5
A
333 334parallel
Strand 6
A
351 354parallel
Strand 7
A
368 371parallel
Strand 8
A
385 386parallel
Strand 9
A
410 411parallel
Strand 10
A
428 429parallel
Strand 11
A
444 445parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 276first strand
Strand 2
A
286 294parallel
Strand 3
A
305 307parallel
Strand 4
A
322 324parallel
Strand 5
A
338 340parallel
Strand 6
A
356 363parallel
Strand 7
A
374 380parallel
Strand 8
A
403 405parallel
Strand 9
A
421 423parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 276first strand
Strand 2
A
286 294parallel
Strand 3
A
310 311parallel
Strand 4
A
327 328parallel
Strand 5
A
344 346parallel
Strand 6
A
356 363parallel
Strand 7
A
374 380parallel
Strand 8
A
403 405parallel
Strand 9
A
421 423parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
416 418parallel
Strand 3
A
434 435parallel
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