Analysis of interatomic Contacts of Structural Units in PDB entry:
8CUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CUA entry

There are 3 chains in PDB entry 8CUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14SER 477
B
 PHE 14SER 477
C
 PHE 14SER 477
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 8CUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 42Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
53 66Right-handed alpha
Helix 4
AA4
A
66 81Right-handed alpha
Helix 5
AA5
A
86 117Right-handed alpha
Helix 6
AA6
A
138 150Right-handed alpha
Helix 7
AA7
A
155 158Right-handed 310
Helix 8
AA8
A
211 227Right-handed alpha
Helix 9
AA9
A
229 232Right-handed 310
Helix 10
AB1
A
233 270Right-handed alpha
Helix 11
AB2
A
276 282Right-handed alpha
Helix 12
AB3
A
282 299Right-handed alpha
Helix 13
AB4
A
299 309Right-handed alpha
Helix 14
AB5
A
312 319Right-handed alpha
Helix 15
AB6
A
320 331Right-handed alpha
Helix 16
AB7
A
333 335Right-handed 310
Helix 17
AB8
A
336 347Right-handed alpha
Helix 18
AB9
A
351 366Right-handed alpha
Helix 19
AC1
A
367 385Right-handed alpha
Helix 20
AC2
A
390 405Right-handed alpha
Helix 21
AC3
A
413 427Right-handed alpha
Helix 22
AC4
A
429 431Right-handed 310
Helix 23
AC5
A
432 438Right-handed alpha
Helix 24
AC6
A
439 466Right-handed alpha
Helix 25
AC7
A
467 477Right-handed alpha
Helix 26
AC8
B
18 42Right-handed alpha
Helix 27
AC9
B
45 53Right-handed alpha
Helix 28
AD1
B
53 66Right-handed alpha
Helix 29
AD2
B
66 81Right-handed alpha
Helix 30
AD3
B
86 117Right-handed alpha
Helix 31
AD4
B
138 150Right-handed alpha
Helix 32
AD5
B
155 158Right-handed 310
Helix 33
AD6
B
211 227Right-handed alpha
Helix 34
AD7
B
229 232Right-handed 310
Helix 35
AD8
B
233 270Right-handed alpha
Helix 36
AD9
B
276 282Right-handed alpha
Helix 37
AE1
B
282 299Right-handed alpha
Helix 38
AE2
B
299 309Right-handed alpha
Helix 39
AE3
B
312 319Right-handed alpha
Helix 40
AE4
B
320 331Right-handed alpha
Helix 41
AE5
B
333 335Right-handed 310
Helix 42
AE6
B
336 347Right-handed alpha
Helix 43
AE7
B
351 366Right-handed alpha
Helix 44
AE8
B
367 385Right-handed alpha
Helix 45
AE9
B
390 405Right-handed alpha
Helix 46
AF1
B
413 427Right-handed alpha
Helix 47
AF2
B
429 431Right-handed 310
Helix 48
AF3
B
432 438Right-handed alpha
Helix 49
AF4
B
439 466Right-handed alpha
Helix 50
AF5
B
467 477Right-handed alpha
Helix 51
AF6
C
18 42Right-handed alpha
Helix 52
AF7
C
45 53Right-handed alpha
Helix 53
AF8
C
53 66Right-handed alpha
Helix 54
AF9
C
66 81Right-handed alpha
Helix 55
AG1
C
86 117Right-handed alpha
Helix 56
AG2
C
138 150Right-handed alpha
Helix 57
AG3
C
155 158Right-handed 310
Helix 58
AG4
C
211 227Right-handed alpha
Helix 59
AG5
C
229 232Right-handed 310
Helix 60
AG6
C
233 270Right-handed alpha
Helix 61
AG7
C
276 282Right-handed alpha
Helix 62
AG8
C
282 299Right-handed alpha
Helix 63
AG9
C
299 309Right-handed alpha
Helix 64
AH1
C
312 319Right-handed alpha
Helix 65
AH2
C
320 331Right-handed alpha
Helix 66
AH3
C
333 335Right-handed 310
Helix 67
AH4
C
336 347Right-handed alpha
Helix 68
AH5
C
351 366Right-handed alpha
Helix 69
AH6
C
367 385Right-handed alpha
Helix 70
AH7
C
390 405Right-handed alpha
Helix 71
AH8
C
413 427Right-handed alpha
Helix 72
AH9
C
429 431Right-handed 310
Helix 73
AI1
C
432 438Right-handed alpha
Helix 74
AI2
C
439 466Right-handed alpha
Helix 75
AI3
C
467 477Right-handed alpha
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There are 3 sheets in PDB entry 8CUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 167first strand
Strand 2
A
201 208anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 167first strand
Strand 2
B
201 208anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 167first strand
Strand 2
C
201 208anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il