Analysis of interatomic Contacts of Structural Units in PDB entry:
8CUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8CUB entry

There are 3 chains in PDB entry 8CUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 34	LEU 648
D	PHE 28	SER 670
A	GLU 34	THR 151

There are 91 helices in PDB entry 8CUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	91	100	Right-handed alpha
Helix 2	AA2	C	121	125	Right-handed 310
Helix 3	AA3	C	143	156	Right-handed alpha
Helix 4	AA4	C	161	175	Right-handed alpha
Helix 5	AA5	C	188	192	Right-handed 310
Helix 6	AA6	C	194	208	Right-handed alpha
Helix 7	AA7	C	226	241	Right-handed alpha
Helix 8	AA8	C	253	260	Right-handed 310
Helix 9	AA9	C	276	288	Right-handed alpha
Helix 10	AB1	C	296	305	Right-handed alpha
Helix 11	AB2	C	311	331	Right-handed alpha
Helix 12	AB3	C	332	348	Right-handed alpha
Helix 13	AB4	C	363	381	Right-handed alpha
Helix 14	AB5	C	382	404	Right-handed alpha
Helix 15	AB6	C	416	455	Right-handed alpha
Helix 16	AB7	C	459	491	Right-handed alpha
Helix 17	AB8	C	495	522	Right-handed alpha
Helix 18	AB9	C	526	546	Right-handed alpha
Helix 19	AC1	C	556	562	Right-handed alpha
Helix 20	AC2	C	563	565	Right-handed 310
Helix 21	AC3	C	566	581	Right-handed alpha
Helix 22	AC4	C	605	612	Right-handed alpha
Helix 23	AC5	C	619	646	Right-handed alpha
Helix 24	AC6	D	113	119	Right-handed alpha
Helix 25	AC7	D	140	147	Right-handed alpha
Helix 26	AC8	D	162	175	Right-handed alpha
Helix 27	AC9	D	180	195	Right-handed alpha
Helix 28	AD1	D	214	228	Right-handed alpha
Helix 29	AD2	D	244	261	Right-handed alpha
Helix 30	AD3	D	273	278	Right-handed alpha
Helix 31	AD4	D	299	307	Right-handed alpha
Helix 32	AD5	D	316	325	Right-handed alpha
Helix 33	AD6	D	331	353	Right-handed alpha
Helix 34	AD7	D	356	360	Right-handed 310
Helix 35	AD8	D	394	411	Right-handed alpha
Helix 36	AD9	D	413	435	Right-handed alpha
Helix 37	AE1	D	444	458	Right-handed alpha
Helix 38	AE2	D	459	485	Right-handed alpha
Helix 39	AE3	D	488	499	Right-handed alpha
Helix 40	AE4	D	500	519	Right-handed alpha
Helix 41	AE5	D	524	553	Right-handed alpha
Helix 42	AE6	D	555	573	Right-handed alpha
Helix 43	AE7	D	584	593	Right-handed alpha
Helix 44	AE8	D	594	608	Right-handed alpha
Helix 45	AE9	D	626	633	Right-handed alpha
Helix 46	AF1	D	639	665	Right-handed alpha
Helix 47	AF2	A	91	100	Right-handed alpha
Helix 48	AF3	A	121	125	Right-handed 310
Helix 49	AF4	A	143	156	Right-handed alpha
Helix 50	AF5	A	161	175	Right-handed alpha
Helix 51	AF6	A	188	192	Right-handed 310
Helix 52	AF7	A	194	208	Right-handed alpha
Helix 53	AF8	A	226	241	Right-handed alpha
Helix 54	AF9	A	253	260	Right-handed 310
Helix 55	AG1	A	276	288	Right-handed alpha
Helix 56	AG2	A	296	305	Right-handed alpha
Helix 57	AG3	A	311	331	Right-handed alpha
Helix 58	AG4	A	332	347	Right-handed alpha
Helix 59	AG5	A	363	381	Right-handed alpha
Helix 60	AG6	A	382	404	Right-handed alpha
Helix 61	AG7	A	416	455	Right-handed alpha
Helix 62	AG8	A	459	491	Right-handed alpha
Helix 63	AG9	A	495	522	Right-handed alpha
Helix 64	AH1	A	526	546	Right-handed alpha
Helix 65	AH2	A	556	564	Right-handed alpha
Helix 66	AH3	A	566	579	Right-handed alpha
Helix 67	AH4	A	604	612	Right-handed alpha
Helix 68	AH5	A	619	646	Right-handed alpha
Helix 69	AH6	B	113	119	Right-handed alpha
Helix 70	AH7	B	140	147	Right-handed alpha
Helix 71	AH8	B	162	175	Right-handed alpha
Helix 72	AH9	B	180	195	Right-handed alpha
Helix 73	AI1	B	214	228	Right-handed alpha
Helix 74	AI2	B	244	261	Right-handed alpha
Helix 75	AI3	B	273	278	Right-handed alpha
Helix 76	AI4	B	299	306	Right-handed alpha
Helix 77	AI5	B	316	326	Right-handed alpha
Helix 78	AI6	B	334	353	Right-handed alpha
Helix 79	AI7	B	356	360	Right-handed 310
Helix 80	AI8	B	394	411	Right-handed alpha
Helix 81	AI9	B	413	435	Right-handed alpha
Helix 82	AJ1	B	444	458	Right-handed alpha
Helix 83	AJ2	B	459	485	Right-handed alpha
Helix 84	AJ3	B	488	499	Right-handed alpha
Helix 85	AJ4	B	500	519	Right-handed alpha
Helix 86	AJ5	B	524	553	Right-handed alpha
Helix 87	AJ6	B	555	573	Right-handed alpha
Helix 88	AJ7	B	584	593	Right-handed alpha
Helix 89	AJ8	B	594	608	Right-handed alpha
Helix 90	AJ9	B	626	633	Right-handed alpha
Helix 91	AK1	B	639	665	Right-handed alpha

There are 12 sheets in PDB entry 8CUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	77	first strand
Strand 2	C	37	40	anti-parallel
Strand 3	C	113	115	anti-parallel
Strand 4	C	118	119	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	69	first strand
Strand 2	C	45	46	anti-parallel
Strand 3	C	108	109	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	213	216	parallel
Strand 3	C	244	248	parallel
Strand 4	C	81	86	parallel
Strand 5	C	262	267	parallel
Strand 6	C	270	275	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	95	first strand
Strand 2	D	47	54	anti-parallel
Strand 3	D	127	134	anti-parallel
Strand 4	D	137	138	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	151	first strand
Strand 2	D	233	237	parallel
Strand 3	D	264	268	parallel
Strand 4	D	100	103	parallel
Strand 5	D	282	286	parallel
Strand 6	D	291	296	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	612	613	first strand
Strand 2	D	624	625	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	A	113	115	anti-parallel
Strand 4	A	118	119	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	69	first strand
Strand 2	A	45	46	anti-parallel
Strand 3	A	108	109	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	213	216	parallel
Strand 3	A	244	248	parallel
Strand 4	A	81	86	parallel
Strand 5	A	262	267	parallel
Strand 6	A	270	275	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	96	first strand
Strand 2	B	46	54	anti-parallel
Strand 3	B	127	134	anti-parallel
Strand 4	B	137	138	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	233	237	parallel
Strand 3	B	264	268	parallel
Strand 4	B	100	103	parallel
Strand 5	B	282	286	parallel
Strand 6	B	291	296	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	624	625	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8CUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8CUB