Analysis of interatomic Contacts of Structural Units in PDB entry:
8CUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8CUY entry

There are 2 chains in PDB entry 8CUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 1074
B
 ASP 89PHE 1074
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 8CUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
37 53Right-handed alpha
Helix 4
AA4
A
57 64Right-handed alpha
Helix 5
AA5
A
66 77Right-handed alpha
Helix 6
AA6
A
114 125Right-handed alpha
Helix 7
AA7
A
143 153Right-handed alpha
Helix 8
AA8
A
174 180Right-handed alpha
Helix 9
AA9
A
182 199Right-handed alpha
Helix 10
AB1
A
202 207Right-handed 310
Helix 11
AB2
A
221 227Right-handed alpha
Helix 12
AB3
A
235 242Right-handed alpha
Helix 13
AB4
A
244 254Right-handed alpha
Helix 14
AB5
A
265 267Right-handed 310
Helix 15
AB6
A
268 283Right-handed alpha
Helix 16
AB7
A
300 310Right-handed alpha
Helix 17
AB8
A
343 350Right-handed alpha
Helix 18
AB9
A
375 391Right-handed alpha
Helix 19
AC1
A
393 397Right-handed 310
Helix 20
AC2
A
409 422Right-handed alpha
Helix 21
AC3
A
437 442Right-handed alpha
Helix 22
AC4
A
447 463Right-handed alpha
Helix 23
AC5
A
479 484Right-handed alpha
Helix 24
AC6
A
523 528Right-handed 310
Helix 25
AC7
A
589 609Right-handed alpha
Helix 26
AC8
A
623 640Right-handed alpha
Helix 27
AC9
A
640 645Right-handed alpha
Helix 28
AD1
A
647 657Right-handed alpha
Helix 29
AD2
A
671 684Right-handed alpha
Helix 30
AD3
A
717 724Right-handed alpha
Helix 31
AD4
A
724 743Right-handed alpha
Helix 32
AD5
A
746 752Right-handed alpha
Helix 33
AD6
A
764 787Right-handed alpha
Helix 34
AD7
A
800 808Right-handed alpha
Helix 35
AD8
A
812 834Right-handed alpha
Helix 36
AD9
A
850 856Right-handed alpha
Helix 37
AE1
A
857 859Right-handed 310
Helix 38
AE2
A
878 892Right-handed alpha
Helix 39
AE3
A
907 911Right-handed 310
Helix 40
AE4
A
912 922Right-handed alpha
Helix 41
AE5
A
952 962Right-handed alpha
Helix 42
AE6
A
965 976Right-handed alpha
Helix 43
AE7
A
990 1001Right-handed alpha
Helix 44
AE8
A
1017 1032Right-handed alpha
Helix 45
AE9
A
1037 1042Right-handed 310
Helix 46
AF1
A
1048 1052Right-handed 310
Helix 47
AF2
B
114 125Right-handed alpha
Helix 48
AF3
B
143 153Right-handed alpha
Helix 49
AF4
B
174 180Right-handed alpha
Helix 50
AF5
B
182 199Right-handed alpha
Helix 51
AF6
B
202 207Right-handed 310
Helix 52
AF7
B
221 227Right-handed alpha
Helix 53
AF8
B
235 242Right-handed alpha
Helix 54
AF9
B
244 254Right-handed alpha
Helix 55
AG1
B
265 267Right-handed 310
Helix 56
AG2
B
268 283Right-handed alpha
Helix 57
AG3
B
300 310Right-handed alpha
Helix 58
AG4
B
343 350Right-handed alpha
Helix 59
AG5
B
375 391Right-handed alpha
Helix 60
AG6
B
393 397Right-handed 310
Helix 61
AG7
B
409 422Right-handed alpha
Helix 62
AG8
B
437 442Right-handed alpha
Helix 63
AG9
B
447 463Right-handed alpha
Helix 64
AH1
B
479 484Right-handed alpha
Helix 65
AH2
B
523 528Right-handed 310
Helix 66
AH3
B
589 609Right-handed alpha
Helix 67
AH4
B
623 640Right-handed alpha
Helix 68
AH5
B
640 645Right-handed alpha
Helix 69
AH6
B
647 657Right-handed alpha
Helix 70
AH7
B
671 684Right-handed alpha
Helix 71
AH8
B
717 724Right-handed alpha
Helix 72
AH9
B
724 743Right-handed alpha
Helix 73
AI1
B
746 752Right-handed alpha
Helix 74
AI2
B
764 787Right-handed alpha
Helix 75
AI3
B
800 808Right-handed alpha
Helix 76
AI4
B
812 834Right-handed alpha
Helix 77
AI5
B
850 856Right-handed alpha
Helix 78
AI6
B
857 859Right-handed 310
Helix 79
AI7
B
878 892Right-handed alpha
Helix 80
AI8
B
907 911Right-handed 310
Helix 81
AI9
B
912 922Right-handed alpha
Helix 82
AJ1
B
952 962Right-handed alpha
Helix 83
AJ2
B
965 976Right-handed alpha
Helix 84
AJ3
B
990 1001Right-handed alpha
Helix 85
AJ4
B
1017 1032Right-handed alpha
Helix 86
AJ5
B
1037 1042Right-handed 310
Helix 87
AJ6
B
1048 1052Right-handed 310
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There are 11 sheets in PDB entry 8CUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 487first strand
Strand 2
A
432 435parallel
Strand 3
A
399 401parallel
Strand 4
A
502 508parallel
Strand 5
A
513 520anti-parallel
Strand 6
A
355 364anti-parallel
Strand 7
A
99 107anti-parallel
Strand 8
A
334 342anti-parallel
Strand 9
A
288 295anti-parallel
Strand 10
A
211 216parallel
Strand 11
A
260 264parallel
Strand 12
B
260 264anti-parallel
Strand 13
B
211 216parallel
Strand 14
B
288 295parallel
Strand 15
B
334 342anti-parallel
Strand 16
B
99 107anti-parallel
Strand 17
B
355 364anti-parallel
Strand 18
B
513 520anti-parallel
Strand 19
B
502 508anti-parallel
Strand 20
B
399 401parallel
Strand 21
B
432 435parallel
Strand 22
B
485 487parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
1066 1067anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 332first strand
Strand 2
A
443 444parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 621first strand
Strand 2
A
663 669anti-parallel
Strand 3
A
691 694anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
941 943first strand
Strand 2
A
932 935anti-parallel
Strand 3
A
793 796parallel
Strand 4
A
703 706parallel
Strand 5
A
980 983parallel
Strand 6
A
1007 1010parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
863 869first strand
Strand 2
A
872 877anti-parallel
Strand 3
A
841 845anti-parallel
Strand 4
A
897 898anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
1066 1067anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 332first strand
Strand 2
B
443 444parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 621first strand
Strand 2
B
663 669anti-parallel
Strand 3
B
691 694anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
941 943first strand
Strand 2
B
932 935anti-parallel
Strand 3
B
793 796parallel
Strand 4
B
703 706parallel
Strand 5
B
980 983parallel
Strand 6
B
1007 1010parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
863 869first strand
Strand 2
B
872 877anti-parallel
Strand 3
B
841 845anti-parallel
Strand 4
B
897 898anti-parallel
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